RNA id: XM_021593764.2


Basic Information

Item Value
RNA id XM_021593764.2
length 4086
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC110514303
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22903729 ~ 22919447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGCACTCActagaacagacacacacacgctcacacacagcaCTCGCACTCTGGAGTAGCGCTTGGattggagggggagagggtgaactgcacctgtcccacacacacacacaaataaaacacTCACCCAGGGGAGAGATCATTCGGCCCTATGTGTGGCTGGGACCAAAGCTTCTCGGCTACCTCTCATAGCTCGGCCATGTTGACTACTGAGGGGGCCCACACTGTAGAGCACGACAACGTCAAGATGGACACCGAACCCCATAGGGACACGGAAACCCAGATGGACACGAGATCCAAAATGGCCACCGACACAGACTCTAAGATGGAGGAGGCGGACATGATGAAGTGGACGGAGGTGGAGTTTGAGGAGAAGTGTACCTACATCGTCAAGGATACTCCGCGGGAGGCAGGGACAGAGAGCAAGGGGTTAACGAGAGCAGAGGCCTCACTGCCTCGTAACCTGGCCTTCAAACAACTAGCTGATTCCAAAGAGgTGATTGGAGTGGCCAGCAGAGAGTACATCCCCAAAGGAACACGCTTCGGCCCCCTGGTGGGTCAGAGCTACACTGCAGACAGCGTCCCCAAAGACGCCAACAGGAAGTACTTCTGGAGGATCTACTCGGAGGGCGACTTCCACCACTTTGTGGACGGCCTGGACGAGGAGCGGTCTAACTGGATGCGCTACGTCAACCCGATCCACTCGGCGGGGGAGCAAAACCTGGCGGCGTGCCAGAATGGCACGAACATCTACTTCTACACGGTGAGGGCCATCCCCCCTGGCACCGAGCTGCTGGTGTGGTACTGCCCAGAGTTCGCTCTCCGCCTCCACTACCTGCCTTCTGAAGAGCTCATGATGCAGAAACTGAaGCAGTCTCTGCTGGAAGCCAAGCAGCAGGCCAGTGAGGAGCATGTTAGCAGCAGCAGCGCCCCAGTCAAGATAGAACACAGTGTCTCCTCCATCCTCGGGGGCCCCACCACCTCTAGCAAGAAGGAGCCCAGCCGGCCACTGGCCACGCGACCCCGCTGTGCCCTCTACCCCCCATTCCGCCCCCACCCTCATCTAACGGAAGAGTTCCTGAGCCTTAAGACCAGCCCGGTACAGTTTTGTTACACAGTAATCAGATCACCAGGCAACCAGTCGTCGGCGACCCCGAGTCCGTCGGCGCGGAGCAGTCCGGAGAGTAGCCCCGATGGTAGCCCCGCAGCTCCCCAACCCACACACCAATCCTCCTCTTTTTACTCCCGAGGTTTGGGTCCCTACCCAGGCTATTCTCCACCAGCCGCCCCCCTTTCCTCGCCCTTCTACCCTCCCGGCCCCCACTATTCCCGCTACATGCTACCCCACCACTACCCACTACCTGGGGGTGGGGTGCCCGCTGTCGGGGGAATGTTTCCAAGAATGTACCCTCTCTTCAGCAGCCTGCTGCCCCCCAACATGCCCCTGCTGCCTGGGGAGGCGGGGAGCAGGTTCTTACTACCTAACTCCTCCCACCCCTCATTCTCCACCCACCGGGACTTCCTCCTCTCCGCCACCACCAGTGCCTTCTCAGCCGCCACCACCCTCGGGGACAAAGCCGGCCCCCACTACCCCCATCACCCCTACTCTGGCAATGATCATCCTCACCCACACGGGCACCCCCACGCCCCCACCAGCGGCTCACCTACAGCGGGCACGGCGGCCCCTAGCGAGCACATGCCCACCAAGCCTACCTCAGCCCTACTGGGCAGTGCCAGCGGCCGGCAGGAGGAGGCCATGAACCTGAGCAAgatgaagcgtggtggtggctcTACAGGCTACAAGACCCTGCCTTACCCACTCAAGAAGCAGAACGGCAAAATCAAGTACGAGTGTAACGTCTGCAGCAAGACCTTCGGCCAGCTCTCTAACCTCAAGGTGCACTTGCGTGTCCACAGCGGTGAGCGGCCCTTCAAGTGTTCGACCTGCAGTAAAGGCTTCACCCAGCTGGCCCACCTGCAGAAACACTTCCTGgtgcacactggagagaagccccATGAGTGCTCGGTGTGCCATAAGCGCTTCAGCAGCACCAGCAACCTAAAGACCCACCTGCGCCTCCACTCGGGTGAGAAGCCCTACTTGTGCAAGCTCTGCCCTGCCAAGTTCACTCAGTTTGTCCACCTGAAGCTGCACAAGCGCCTTCACTCCCGCGAGCGGCCACACAAGTGCCCCCACTGCCACCGCCACTACATTCACCTGTGCAGCCTGCAGCTACACCTGAAGGGCTACTGTCTGGCTGCCGTCACCTCCTCAGGTGGCCCCACCCCCAGCCCCTCCACCCAGGAAGAGCTCCAGCGCATCAATGAGGAGATTGAGCGCTTCGACATGAGCGACCACGCTGAGAGGCTGGACCAGCTCCAGGGAGGGGTTGAGGTTGAGGCTGTCCTGGAGAAGCAGGTCCTGGGGATGCTGTGGAGGGAGATGGACCTCAAGACCTCCGGCTACCACCACCACAAGGGCGGCGCCAGTGAGCTCCAGTCTACAGGTTACGGCCTCTACAATTCAGTCAATGAGACGTCGGTTATCAAACTGCGCCGAAGCAGTCCGCTTCTTCCTTCCAACGTCACGATCAAGCAGGAGTCTGAGGAACAGGCTTGAGCTCACCGTTTGAAGGACGTTGAGTCAGACTGTGGCTCTGAGAACTTGGTTAGCAGGAGCAACGAgtgtaaatatattttgatggtTGTAGCGACTGGGGTTTTCAAACTTTCAGGGACTTATGTACTCAGGGCTCCAAGAGACACTGTCCCCAGATTACTTAACTGTTCCACTGTGTCCTACACTTAAGACAGGACAATCATCCACCcatatcattgttattattactgTTTATTTTCAATTTTATTTTTGTTGAATTTATTATAACCTCCTTAATTTATTATGCAATTATTCTGTCTTCAAAAAGCAATATGTGGAAGTGATGTTTACAATGACCAGGTAATTCATTGTAATTTACTGTTTGTTTTTCTGATTTTGATTTCACTCTGGGGCCATTTCTTTGTAGatactttctctctctgcctgtatccATCCTGTGTGACCTGTTGAGAAGCAGGGGtgcctacttttttttttttttttttaaatatttaaacaATATAGCAGGTTAAAAAGGGTCAAAGGTCGCAACTTTGTTTTGCCAAAGGTGAACACAAACTTTTGATTAGAAAGAAAAGGCATTGCTTGACCTTCTGACCCTTCCAGCAAGCTTCTCTATGTCCACACTCATCCTGAGTTCTGCAAAAATTGCATTTTTTGTTTTATGTATTTTCAACAACGGTTACCTCAGTGTGTGTATGATTGTATGCCtgtgagtatgtgtgtctgtacgtTCAGAGGGAAGCTGAAGGAGAGTGTGTTTTCTATTTATTGCTTTTGCTACTTGAAGAAGAAACCAAAATGAACTGGAGTGCCTCTCCACATGATCCAAAGAGCAGGAAAGTCTGCTCAATATGTAGCATATAAAGACTGCGAGTCCAGGAATCCTTCCCCCCCCAACAGTCCAAGGGAACTTCAATACACTGTTAATGGCAAAAGGAGACACTGTAAAGTTTACTTGGCTTTAGTTTCAAACACACCAAAAAGAGACTTATATTATTGAAAAGAAGACCAAGAGAATACTGTTTGTCTGTGATGAAGTGTTAGCTCTTTAGCTGTGGTTTTGTTTGAGAAAAATGTATCCCCCTTCTCATTTTTAAATGGCACAGACCAAAGCACCTTGGCCTTCTTATGCACTGGCCCCTTCCCTTTATGACTTAAGTGCCGGTGCTTGCTCCTCCCACTATTCAATATGATTGGACTGTTATAATGGCTTTAAGACGACATATGGTTTGTCTCCATAGCAACTGTGAGCCCAGGCCGGTGACCTGGAAGCAGTTGCACATCAGCCCCCATCCCCtcgcttttttctctctccctccaaccctgaAGTATGACCAAAGCATCCCCTTTCATCTTTAGCCCTAGAGGAGAAAAAAATACTGTCTCTGTTTACATACTCGTTTACATTGTTATTTATGTGCAAAATGTAAATTTATGATAAATGTCCACAGTTCTAATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269836 lncRNA downstream 2959 22900527 ~ 22900770 (-) True G236085
TU269835 lncRNA downstream 3796 22899717 ~ 22899933 (-) True G236084
TU269833 lncRNA downstream 6193 22897320 ~ 22897536 (-) True G236082
TU269790 lncRNA downstream 54576 22848844 ~ 22849153 (-) True G236049
TU269743 lncRNA downstream 133066 22769166 ~ 22770663 (-) True G236003
TU269846 lncRNA upstream 5685 22920838 ~ 22921076 (-) True G236095
TU269871 lncRNA upstream 40454 22955607 ~ 22955819 (-) True G236120
TU269884 lncRNA upstream 52193 22967346 ~ 22967571 (-) True G236133
TU269920 lncRNA upstream 78615 22993768 ~ 22994150 (-) True G236169
TU269926 lncRNA upstream 82478 22997631 ~ 22997973 (-) True G236174
XM_021593758.2 mRNA downstream 33982 22867615 ~ 22869747 (-) True LOC110514295
XM_036972412.1 mRNA downstream 37326 22849505 ~ 22866403 (-) True LOC110503928
XM_036972414.1 mRNA downstream 48871 22849505 ~ 22854858 (-) False LOC110503928
trnap-agg-7 mRNA downstream 54434 22849224 ~ 22849295 (-) True trnap-agg-7
XM_036972409.1 mRNA downstream 54974 22643842 ~ 22848755 (-) False bbs9
XM_021593777.2 mRNA upstream 122607 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA upstream 122607 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA upstream 122607 23037760 ~ 23051032 (-) True LOC110514322
XM_036972421.1 mRNA upstream 223483 23138636 ~ 23140888 (-) True LOC110514382
LOC118944658 mRNA upstream 225681 23140834 ~ 23142966 (-) True LOC118944658
TU269608 other downstream 328740 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1148228 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1160318 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1404897 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1433784 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 241956 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 856371 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1265403 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1265403 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1606066 24521219 ~ 24521544 (-) True G237832

Expression Profile