RNA id: XM_036972416.1


Basic Information

Item Value
RNA id XM_036972416.1
length 3545
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110514322
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23037760 ~ 23051032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACAGTCCGGATAAGACTTTGCCACTGGAGTGGAGACGCACAACGATTAGTCGGTTTTTAACAATGTGTTCAACGAGTCTAAAACGGAGAGTGTTTTAAGTTTGTTCTGTAATAGACGAAGCGCATACCTTGTTCAAAAAACAGTCGAAGTAGCTTCCATTTTTTCAGCGTTTTTGTGTGCAGCCTGCCAATAAAACCACAGAGCTCACTCCGCGAGCGGTTTGTGCTTTTGGACGTTTTACTTGTACTACTCTCACCATGGAGTACACCTCTTCCCCGAAGCCACAGCTCTCCTCCAGGGCAAACGCGTTCTCGATAGCAGCTATCATGTCAAGTGGAAAAACGAAGGACAAGGAAACGGATGAAAACACCATCAAGCCACTTGAACAATTCGTGGAGAAGTCCTCCTGTAACCAAGGTTTGGGAGAGCTGTCTTCTCTAGATGGGCACGGAGATTTCAGCGGGAGCGCGCCTCCAGTGTGCACAGAGCCGCTGATCCCCACCACCCCCAGTGTTCCCAGCGAGGAGATGGCCAAAATTTCCTGCAGTTTAGAGACCAAGGAACTCTGGGACAAATTCCATGATCTCGGCACTGAGATGATCATCACAAAATCCGGAAGAAGAATGTTCCCCACCATCCGTGTGTCCTTCTCCGGGGTGGACCCGGACGCCAAATACATCGTGCTGATGGACATTGTTCCGGTCGACAACAAACGCTACCGCTACGCCTACCACAGGTCGTCCTGGCTCGTGGCGGGCAAGGCGGACCCTCCTCTGCCTGCACGgTTATACGTGCACCCTGACTCTCCTTTCACTGGGGAACAGCTGCTCAAACAAATGGTGTCTTTCGAGAAAGTAAAGCTCACCAACAACGAACTGGACCAACATGGACACaTCATACTAAACTCCATGCATAAGTACCAGCCCCGGGTCCACATCATCAAGAAGAAGGACCACACCGCCTCCCTTCTCAACCTCAAGTCAGAGGAGTTCCGCACCTTCGTTTTCACAGAGACTGTCTTTACCGCGGTCACAGCCTACCAGAACCAGCTGATAACCAAGCTGAAGATCGACAGCAACCCGTTTGCGAAAGGCTTCCGAGACTCCTCCCGACTGACGGACATGGAGAGCAGGGAAAGTGTTGAGAGTTTGATCCACAAGCACTCGTACGCACGGTCACCAATACGCACCTACGCAGGTGAGGAGGAGACACTGGGGGATGACGGCCATGCCGCACACAGGGgTTCTGCGTTCACCGCCTCTGACAACCTCTCCCTGAGCTCCTGGGTCACTGCCACCTCTGGTTTCTCTGGCTTCCAGCACCCCCAGTCCCTCTCTGCCATGGGTTCCAGCAGCACCTCCATGGCCAACCCCTTGCCCCACCCCATGCAGGGCTCCCTGCCCCCCTACAGCCGGCTGGGCATGCCCCTGACGCACTCAGCCCTGGCGGGCACCATGCAGGGCAGCGggccctccttcccctccttccaCATGCCCCGCTATCACCACTACTTCCAGCAGGGCCCCTACGCTGCCATCCAGGGACTGCGCCACTCCTCCACCGTCATGACCCCCTTTGTATGACTCCCTCTGGGGTGACTGCCTGGCCGAGTAGCCCCTCATCAGCTACAACTACGTTTATagacacacctgcacacacaagTAGATAAACTCACCGATCTGTCCCCTTCAGCATCATCACCCATCGTCACCACCGTGTCCTTGTAAATAATAAGCCCTCTGGCCGAGGCGACTGACTGAACGACCTGGAGAGGCTGCCTGGCTGCTGTCCTGCATGCTGACAGCTGAACCGGAGAGGAAACAGACTCCTACGGGACCTGGTGGAACAGACACAGAGACCCACAGACTGATATGAACACTAGATATGAACACTATTGACCTGCATATGAACATTTACGACCCAGATATGAGAACTGATGATCcaggtatatataaaaaaaaaaatcaacaacagAGATGCTGAGGAATGATGACCATGCACAGTGATGCGTTGTGGGAAATAGGTAATGGTCTGCTTGTGATAACTGTCGTTTGCCCCTGCCCTCCAACTGTTGGTCACAATGTTCATTTTGCACCCACTCTCCAGAAAGGCATGGACAGGAGAACCAGTGAACTGTCTGGCTTACGGACATTAAAACCAGAGGGTGTGGTAATTGTTCGTTCTCTCACAGCTTCTGAGGAAAATGAAGAATACGGGACTCCAAAAGTTATGGGCGTGCACAAATTCCAATCCTGGGCACCGCTTGTGGCCACGGAGGAGAACTGTCTTCACTCCAGCTGCTGGGTCATGGAGGAATGGCAGCCATTTTTGACTGAGTCAAAGGATTCCCACAGCTTGCTGACCAAAACTCACAGGGACGGTAGAGGcaacatctctcctctcctgcttgaACTCAAACTCCGCTAAGCTTCCTCTGCATGCAGAATCCTATAGCCTCCTCCAGTCAGGTTGGCTGTTGCCATGGTAGTCAGATTTGTGCACATAGATGCCCTAGAGACAGCGAGAAGCCAATTGTTTCTTTCCCATCTATAAAGCCAGCCATGTGTACAGTGAAGAAGTTATAGTGGAAGATGATCATGTTTGATAGCAGTACATAAATATatccacactacacaaacacacacacaggacagaaaCTATAAGACGAATGTCACATGACAGTGTCATATCATTGGACGCATGCTGCTGCAACAGATAACacagaaaactttttttttttttatcctgaccCTGACCGGGTCTCAAACTTCTTTGTCAAGTTTCCTTTGTCATCCAAAAAGCTTATATTCACCTCATACCATTTTATGTACTGCATCCAATTAGATTTGTGAGGTCAATGAAAATAGATGTTAGTTCATGTCTCACGTGTGAATGGGCCCTAGAAGACCTCTGGAGGACCTCTCTATCAAAGTCACAGAGCGTTAAAATCACACTACGTCGTCACGTATCCCCAACACCAGCAGATTGGCTTCTCTAACCTATCAGTGGCAAATCAGTAATGTATCAATGAAGTaccaagagggagagaaaaccTGCAGACTCTGCAGCCGTGAAAGGCTAAGATGGACTTTCTCTTGCTGTATTGGCCGGAAGCCTGATTCACTACCTAACCAATACCTAACCTCTGGCGCCACACTATATATAGCCTGATTACTGTAGCCTGATCTATGTCTGCCTCAGGCTGTGTCGACACTACAGCACTCTGGGAGAAAGTCCACACCTGTAAATAATGACTCAGTGGTGCCTCCACTTAGaggagggtggggagggagggagatctgTTTTGGTCGTCACGTCATTGGCGATTCATCAAGCTAGCCCCTTCTAACCAAAATGACACAGAAGCTAAGATAGTGACACAAAACGCATAGTGTATGCATCGGTGCCTTTGTAGTGCCACTCCTCTAAAAATAAAGAATAATTGCAGATGGATTCATCCATTCAATGATGTCTCATACAGTTTGTTACCACAGTAAAACCAATGTTATTGTAAAATGCTGTTCCTATATTGGCAAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270841 lncRNA downstream 1057 23036088 ~ 23036703 (-) True G236994
TU269949 lncRNA downstream 23928 23013580 ~ 23013832 (-) True G236196
TU269945 lncRNA downstream 26403 23011124 ~ 23011357 (-) True G236192
TU269926 lncRNA downstream 39787 22997631 ~ 22997973 (-) True G236174
TU269920 lncRNA downstream 43610 22993768 ~ 22994150 (-) True G236169
TU270856 lncRNA upstream 13722 23064754 ~ 23064960 (-) True G237009
TU270894 lncRNA upstream 71451 23122483 ~ 23123076 (-) True G237041
TU270886 lncRNA upstream 92482 23143514 ~ 23143904 (-) True G237033
TU270881 lncRNA upstream 92928 23143960 ~ 23144390 (-) True G237028
TU270922 lncRNA upstream 139579 23190611 ~ 23191037 (-) True G237068
XM_021593770.2 mRNA downstream 118313 22903729 ~ 22919447 (-) False LOC110514303
XM_021593764.2 mRNA downstream 122607 22903729 ~ 22915153 (-) False LOC110514303
XM_021593758.2 mRNA downstream 168013 22867615 ~ 22869747 (-) True LOC110514295
XM_036972412.1 mRNA downstream 171357 22849505 ~ 22866403 (-) True LOC110503928
XM_036972414.1 mRNA downstream 182902 22849505 ~ 22854858 (-) False LOC110503928
XM_036972421.1 mRNA upstream 87604 23138636 ~ 23140888 (-) True LOC110514382
LOC118944658 mRNA upstream 89802 23140834 ~ 23142966 (-) True LOC118944658
XM_021593788.2 mRNA upstream 93484 23144516 ~ 23164384 (-) True LOC110514348
XM_021593802.2 mRNA upstream 121578 23172610 ~ 23192782 (-) False LOC110514368
XM_036972420.1 mRNA upstream 121578 23172610 ~ 23196343 (-) True LOC110514368
TU269608 other downstream 462771 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1282259 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1294349 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1538928 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1567815 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 106077 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 720492 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1129524 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1129524 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1470187 24521219 ~ 24521544 (-) True G237832

Expression Profile