RNA id: XM_036972421.1


Basic Information

Item Value
RNA id XM_036972421.1
length 1559
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110514382
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23138636 ~ 23140888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTGAAATCCACTTTGAAAACTGCAGAATAACGGCAACAACAATCCATTGTGAGGAAGCTTGTCAGAAAATATTGACTTATTtaaaacactaaaacacacagtGCATTTGATGTTTATGATTTGAGATCAAAAACCTGATTATACGATTTCCTTCTTTCGGTGCGCTGTGATGTCCTCATATCCCGCGAGGGAGGTCATGGCCTTTCAGTGCAGAGGGATCAAGGGTCGCTATGTGAACATCTTCTTGTCGGGCTCAAATAAACACCTGTCACTGTGTGAGGCGGAGGTGAATGTGGGCAGGCGTCCTGAGAATGCAGCCACTGGTGGGATAGCCAGTCAGTCGTCGCAGTGGGACAAGTTTGGAGATGCCAACAATGCCATTGATCTGAACTGGACCAATCGGTATCTGGAGGGGTCCTGCAGCCACACGAAAGATATCGACCCCTGGTGGCGGGTGGACATGAGCAAGACCCACAACGTCACTTACGTCACCATTACCAACAGAGGGGACTGCTGCTCCGACAGGATCAGTGGAGCAGAGATCCACGTTGGGGACTCACTGTTCAACAAAGGCAATAGCAACCCACTGTGACTTATCTTCGTAACACAACTTCTGGCTGGCTACACAGCCCACTATGTGTCATCCCAGTAACACAACTCTCCCTTAAACAACACAGCCATCTCCATAACTCATCATCATCAACTATGAGAATTTAAccagacttaaaggggcaatccggagatgaaacaataacaaacgGTTCTCCCGCCCTAGggatgggtctggagaaatgtaaccactcttaaattcatagacatagctatggatgcaaggactgaccatctgtGAAATTAAAATTATAGTtgaaaccatgttttgaggctatatagtttgtttacatttactttgtttaagAACATTACATACATGTTCTGATGGgctacgacagttgaactaagctcataaggcatttctaagttacagtatattcttcaagaatccatCATTAATTTATACATCCCAAAATGTATTTAGCCACTACAGATTGCCCTTTTAAGCTTCAGGAAATTCATCCCTGATCCCTTATTTTGATCAAATACTGTTTGTCCCGCAATCTTCTTATAAAATATAACAATGCTCAAGATTCCTATACCTGTAGGTGTGCCGGGATTCCATACATCCCTGCTGGGCAAACCAGGACATTTCCGTGCAGTGGGATATCGGGGCGCGATGTCAACATTCTCCTCCCAGGAAAAGAGAAGTGCCTGACTTTTTGTGAGGTGGAACTGCACGCAAGCACCTTTCAGGCAGCCCTGCCTTCAACTGTCACTGAGACAGCTGTTACAGCTCCAAACCTAAACCTGGCCTGGCTGTGGGATCTTCTGAGATCCCTCAGAAGACTTGCCATTCGGAAAGATCTGCTACTCCTACATCCAATGATACAGTACCCTCCAGGCTAAAATTGGGACCAGAAATCAGAAATTCTTAACCAGAGGCTTGTAATTTTTCTGAGCAAACCCCATCCCTCTTGTTTGAAAGAAGGCAACTTGGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270894 lncRNA downstream 15560 23122483 ~ 23123076 (-) True G237041
TU270856 lncRNA downstream 73676 23064754 ~ 23064960 (-) True G237009
TU270841 lncRNA downstream 101933 23036088 ~ 23036703 (-) True G236994
TU269949 lncRNA downstream 124804 23013580 ~ 23013832 (-) True G236196
TU269945 lncRNA downstream 127279 23011124 ~ 23011357 (-) True G236192
TU270886 lncRNA upstream 2626 23143514 ~ 23143904 (-) True G237033
TU270881 lncRNA upstream 3072 23143960 ~ 23144390 (-) True G237028
TU270922 lncRNA upstream 49723 23190611 ~ 23191037 (-) True G237068
TU270923 lncRNA upstream 53135 23194023 ~ 23194443 (-) True G237069
TU270934 lncRNA upstream 66862 23207750 ~ 23207980 (-) True G237080
XM_021593777.2 mRNA downstream 87604 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA downstream 87604 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA downstream 87604 23037760 ~ 23051032 (-) True LOC110514322
XM_021593770.2 mRNA downstream 219189 22903729 ~ 22919447 (-) False LOC110514303
XM_021593764.2 mRNA downstream 223483 22903729 ~ 22915153 (-) False LOC110514303
XM_021593788.2 mRNA upstream 3628 23144516 ~ 23164384 (-) True LOC110514348
XM_021593802.2 mRNA upstream 31722 23172610 ~ 23192782 (-) False LOC110514368
XM_036972420.1 mRNA upstream 31722 23172610 ~ 23196343 (-) True LOC110514368
XM_036972432.1 mRNA upstream 201235 23342123 ~ 23368891 (-) True LOC110503934
XM_021593864.2 mRNA upstream 265365 23406253 ~ 23495800 (-) False LOC110514498
TU269608 other downstream 563647 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1383135 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1395225 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1639804 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1668691 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 16221 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 630636 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1039668 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1039668 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1380331 24521219 ~ 24521544 (-) True G237832

Expression Profile