RNA id: TCONS_00028796


Basic Information

Item Value
RNA id TCONS_00028796
length 766
lncRNA type antisense
GC content 0.45
exon number 2
gene id XLOC_014560
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8983355 ~ 8985638 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAATGGGTTATGATCATCAGACGAATCGGGAAAAGTTGTGTATTTTGACATCTTGGTGCTGGTTTAGATCTCGCCAAGATGTAAAAACAGGTTTAACTCAAAGGCGATGACCAGATACAAAGCGAAACAGTGTTGTTTAGCGGATAATTACCGGTAAACCTCAATCCAGTTCGCCAATCAAGCAAAGCGTGGCCCCATGACATCATCGCCTGTGGAATGAGCTGACATGAAGCCCACACTGGTGAGTTGCCAAGGGAACTAGCAGGGATGGAGGGAGCTTCAGTGGACCGCGTGTGGGTTTGTGGGTTTTGCCCCTGTTTCGCAACAGTATGGTGTCAATTAAAGAGGGCCAGAAATCAGGATCTGGGCCTCATTTGGTGCATACCACCACCACAACGGCCTTAAGCCACATGAGGCAAAAACTAAATACATAATGACGACTTGATGACCCGGTTCTAGAGTTTTTGCATTATTAATCTTGTTAACGAGGTGAGCGGTGAACACACCAGGCGTCACAGCGGATATGAATAATATGTGCAAGTCTGAAAGCATTTTGGCACAATCGCGGAATTGTAAATTGAGTCAAGAAGCCCAAACAGACACATGGAATGCGTAAAAGTTAATGCTGAGCAACATGTCTCACACAAATGTATTCATCCACACAGGCTTCttcatcttgcttatatacactatgaacagcagctacgctaattattctctttattctctatttcaccTGAGGGTACTCATCCCGaagtcctca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169798

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028790 lncRNA downstream 158821 8817560 ~ 8824534 (-) True XLOC_014555
TCONS_00030163 lncRNA downstream 214759 8760765 ~ 8768596 (-) False XLOC_014554
TCONS_00030162 lncRNA downstream 214834 8760765 ~ 8768521 (-) False XLOC_014554
TCONS_00030161 lncRNA downstream 220980 8760765 ~ 8762375 (-) False XLOC_014554
TCONS_00028781 lncRNA downstream 281292 8699754 ~ 8702063 (-) True XLOC_014552
TCONS_00028797 lncRNA upstream 44381 9030019 ~ 9036367 (-) True XLOC_014561
TCONS_00030164 lncRNA upstream 190789 9176427 ~ 9186434 (-) True XLOC_014562
TCONS_00028798 lncRNA upstream 246901 9232539 ~ 9234033 (-) True XLOC_014563
TCONS_00029755 lncRNA upstream 395820 9381458 ~ 9382021 (-) True XLOC_014564
TCONS_00029756 lncRNA upstream 405597 9391235 ~ 9398466 (-) True XLOC_014565
TCONS_00028795 mRNA downstream 20449 8958628 ~ 8962906 (-) True XLOC_014559
TCONS_00028794 mRNA downstream 20471 8958134 ~ 8962884 (-) False XLOC_014559
TCONS_00028793 mRNA downstream 43287 8928434 ~ 8940068 (-) True XLOC_014558
TCONS_00028792 mRNA downstream 56780 8893952 ~ 8926575 (-) True XLOC_014557
TCONS_00028788 mRNA downstream 102667 8816657 ~ 8880688 (-) False XLOC_014555
TCONS_00028799 mRNA upstream 474794 9460432 ~ 9472893 (-) False XLOC_014567
TCONS_00028800 mRNA upstream 474794 9460432 ~ 9472935 (-) True XLOC_014567
TCONS_00028801 mRNA upstream 496060 9481698 ~ 9503473 (-) True XLOC_014568
TCONS_00028802 mRNA upstream 527344 9512982 ~ 9522548 (-) True XLOC_014569
TCONS_00028803 mRNA upstream 626525 9612163 ~ 9662958 (-) False XLOC_014571
TCONS_00028791 other downstream 130700 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 1157822 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028762 other downstream 1515039 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028751 other downstream 1705762 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028719 other downstream 2744366 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028818 other upstream 1026860 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028819 other upstream 1137595 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028825 other upstream 1252815 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028853 other upstream 1650731 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 1706528 10692166 ~ 10730478 (-) False XLOC_014599

Expression Profile

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