RNA id: LOC118944658


Basic Information

Item Value
RNA id LOC118944658
length 872
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC118944658
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23140834 ~ 23142966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACTAAATGTGACATGCCTGTGTCAGGGCTCTCTAtcctcattcttcttcttctggcCCACAGTGAATTTTGCTCTGAGCTATCCTCATTATTCTCCTTCTGGCCCACAGTGTATGTTGCTCTGGGGGGCAAAGCAGCCCAATCCTCCACATTCTATGGAGGCACTGCAAAAAGATCCCTTGATGGAATATGGAACTCGACTTACGAAGATCACTCCTGCAGCCACACTTTGGGAGAGACCAACCCCTGGTGGAGGGTGGACCTGCCGGAGACTTACCAAGTCCCCTCCGTCACCATCACCAACAGAGATACTTCAGCAGAGAGGATCAACGGGGCTGAGATCCGCATTGGAAACTCCCTGGAGAACGATGGTAACAGTAACCCCAGGTGTGTCACTGCCCTTTCATCCTACATTTTAGCTTAGTAAAAATgcctttgacaacttttactccactagaTTCCTATTTTATGTTTACTTTTCACTCCCATATATTttcactgacacccaaaagtactcaggcaggacagcaaaatggtccaattcatgcacttgtAAAGATAATATTACTGGGTAACTTACTCTTTTACTTCTATCTTTTTGTACTGccgtatatttacttttactcaagtatgacagttgggtacttttttcacAACTGGGCTTCAAAAGGAGGTGACGATAGAGAATACGAGGAATCCACCTCCTCCTAATACATCTTAATGTTTCATCCAGTTGTGCGTTGAGATCCTACATCCCAGCAGGGGGCTCCACTACATTTCAATGTCACGGGATGTTGATCCAGAGATGATCGATGGGGCTGAAATCCACTTTGAAAACTGCAGAATAACGGCAACAACAATCCATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270894 lncRNA downstream 17758 23122483 ~ 23123076 (-) True G237041
TU270856 lncRNA downstream 75874 23064754 ~ 23064960 (-) True G237009
TU270841 lncRNA downstream 104131 23036088 ~ 23036703 (-) True G236994
TU269949 lncRNA downstream 127002 23013580 ~ 23013832 (-) True G236196
TU269945 lncRNA downstream 129477 23011124 ~ 23011357 (-) True G236192
TU270886 lncRNA upstream 548 23143514 ~ 23143904 (-) True G237033
TU270881 lncRNA upstream 994 23143960 ~ 23144390 (-) True G237028
TU270922 lncRNA upstream 47645 23190611 ~ 23191037 (-) True G237068
TU270923 lncRNA upstream 51057 23194023 ~ 23194443 (-) True G237069
TU270934 lncRNA upstream 64784 23207750 ~ 23207980 (-) True G237080
XM_021593777.2 mRNA downstream 89802 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA downstream 89802 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA downstream 89802 23037760 ~ 23051032 (-) True LOC110514322
XM_021593770.2 mRNA downstream 221387 22903729 ~ 22919447 (-) False LOC110514303
XM_021593764.2 mRNA downstream 225681 22903729 ~ 22915153 (-) False LOC110514303
XM_021593788.2 mRNA upstream 1550 23144516 ~ 23164384 (-) True LOC110514348
XM_021593802.2 mRNA upstream 29644 23172610 ~ 23192782 (-) False LOC110514368
XM_036972420.1 mRNA upstream 29644 23172610 ~ 23196343 (-) True LOC110514368
XM_036972432.1 mRNA upstream 199157 23342123 ~ 23368891 (-) True LOC110503934
XM_021593864.2 mRNA upstream 263287 23406253 ~ 23495800 (-) False LOC110514498
TU269608 other downstream 565845 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1385333 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1397423 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1642002 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1670889 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 14143 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 628558 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1037590 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1037590 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1378253 24521219 ~ 24521544 (-) True G237832

Expression Profile