RNA id: XM_021593802.2


Basic Information

Item Value
RNA id XM_021593802.2
length 1899
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110514368
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23172610 ~ 23196343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAAATTGTTAGGAGGATGTCCTtggagacgaggggtgggggCGTGTTTGACTTTGTGACTGGTGTATAAATGAATCAGTCAGATTCAGCTGTCTACAGAGCTTTTTGCCtacatcaacatcaacagtgacCTTATTTTGTTGAGTGTGAAGGATGGTGAGATCAGCCATGATGTTCCTCTTGTTGAATCTCCTGGGACTGGCAGGCTCTATTGGCGCGACCGTCCCAAGAAATCTTGCCTTGCGTGGAAAAGCAACACAGTCAGACCTCATCGAGAACCCATGGCACGGTTTGAGTCATGCCTCCAATGCCATTGATGGGAACCGCGATTCACATTTCCATCATGGGTCCTGCACTGCCACTGACGAATCCACTAACCCCTGGTGGAGAGTGGACCTGCTTGATACCTACATAGTCACCTCCATCACCGTCACCAACAGAGGGGATGCTGTTCCTGAGAGGCTTAACGGGGCTGAGATACGAATAGGAAATTCTTTAGTGGACAATGGCATTCATAACCCTCTGGTTAAAACAATTCCCTCCGTTCCAGTTGGCAGTTCTCTCACCCTTGCCTTTGACCCAGGCTTCAAAGGACGCTATGTGACTGTGGTTCTACCAGGCCAGAAAAGACTTCTGACACTCTGTGAAGTGGAGGTTTATGGCTACCTTGCCCCAACCGGAGAGAATGTGGCTCTATATGGAAAGGCCACCCAGTCGTCTTTGTATGGGTTTGGCATTCCAGGCAATGCTATTGACGGGAATCGCAACGCTATTTGGATAGGAGGGTCCTGCACCCACACTCTACAGGACATCAACGCCTGGTGGAGGGTGGACCTTCTGAAGACCTACAAAGTGTtctccatcatcatcaccaacacaGTCGACAGTGTTCCCAGCAGACTCAATGGAGCTGAGATACTCATTGGAGACTCCCTGGAAAACAACGGCATCGACAATCCTAGGTGTGCTGTGATCTCCTCTATCCCAGCTGGCACTTCTAGCACCTTCCAGTGTCCGGGCATGGAGGGTCGATATGTCATCGTGGTCATTCCAGGGAGGAAGGAGTACCTGACCTTGTGTGAGGTGGAGGTGTACGGATCACCCCTGGATGGGACTGGGCCTACATGTAACTAAATCAGATCGTTAACTCTTAACAGCACCCTGCAATGTTTGGGGAATGTATTGTCTTACGAAAAACAATGAATGTTTTTTAGTATACTTCCAGTATGTTAATGATCAAAAATGTGTATTTACTTTCAGTATACAAAAACAAATTTGGTCCCCTGTTCTGGACACTGTTTTTGGAAGTTTGGGTATAAATTGGCCAACTTTTTGTGTAACACAAAAATATTCATACATTTCTTGTAGCCTAATTATTGGTTGGATGGTTCACATTGATACTTAGAAATACATATAATGCTTTAATACTATTGCTATTATGCTAAAATGAATTAAAGGTGAAATCTTGGATCTGGAATGTTTCCATGATGTATTTGGTTGTTTGTGCTCGTAGTCTGTAAATAGGTCCATTTTGGGCTCTGTACAATAATCCACTCTTTGCCATAGCCTGTTCCCTCTAAAGTTGTATCCCTATCTTCTACTCTAAATTATTCTATTGTGGTCGGAATTACTGCAGATGACTTTATTGCTTGCTGCCCTCATATCATAAAACATGGTGAACAAAGTTTGAAAGACCATAAACATAAGCAAATATTTACCAGCTACATTAATATACGGCTGAATGCTACTCAGATGACCAGACGAGGACCAGACCAAATCAAGCATACATCAACATACGTTTAAACTCCACTGGACTTTAGGTTAGAGAATATGACAGAATCCACCACTAGTCCGCCTGGgattgtgtatgtgacaaataaaatttgatttgatttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270881 lncRNA downstream 28220 23143960 ~ 23144390 (-) True G237028
TU270886 lncRNA downstream 28706 23143514 ~ 23143904 (-) True G237033
TU270894 lncRNA downstream 49534 23122483 ~ 23123076 (-) True G237041
TU270856 lncRNA downstream 107650 23064754 ~ 23064960 (-) True G237009
TU270841 lncRNA downstream 135907 23036088 ~ 23036703 (-) True G236994
TU270923 lncRNA upstream 1241 23194023 ~ 23194443 (-) True G237069
TU270934 lncRNA upstream 14968 23207750 ~ 23207980 (-) True G237080
TU270950 lncRNA upstream 42956 23235738 ~ 23235942 (-) True G237092
TU270967 lncRNA upstream 73287 23266069 ~ 23280190 (-) True G237108
TU270942 lncRNA upstream 96750 23289532 ~ 23290982 (-) False G237086
XM_021593788.2 mRNA downstream 8226 23144516 ~ 23164384 (-) True LOC110514348
LOC118944658 mRNA downstream 29644 23140834 ~ 23142966 (-) True LOC118944658
XM_036972421.1 mRNA downstream 31722 23138636 ~ 23140888 (-) True LOC110514382
XM_021593777.2 mRNA downstream 121578 23037760 ~ 23051032 (-) False LOC110514322
XM_036972432.1 mRNA upstream 149341 23342123 ~ 23368891 (-) True LOC110503934
XM_021593864.2 mRNA upstream 213471 23406253 ~ 23495800 (-) False LOC110514498
XM_036972455.1 mRNA upstream 213471 23406253 ~ 23563489 (-) False LOC110514498
XM_036972463.1 mRNA upstream 213471 23406253 ~ 23563489 (-) False LOC110514498
XM_036972471.1 mRNA upstream 213471 23406253 ~ 23563489 (-) False LOC110514498
TU269608 other downstream 597621 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1417109 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1429199 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1673778 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1702665 21469661 ~ 21469945 (-) True G234600
TU271267 other upstream 578742 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 987774 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 987774 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1328437 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 1576780 24769562 ~ 24769971 (-) False LOC110515154

Expression Profile