RNA id: XM_036972424.1


Basic Information

Item Value
RNA id XM_036972424.1
length 2871
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110514420
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23236262 ~ 23290996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAGATCCAAGTCTCAGTTGAATAGCAAATTGGTCCAAATTATTGAAAGGAAAAAAGCCTTgggaagaggaggggtaggagtAGGAGACCGGAGGAGGGGGGCAGCAACAATCCTTTTCCCTTCCCAGATGGTGAGAACAGTGCCGATCGCATCACATTCCGCGGAGCGTTCCCAGTCGTCCTATGGTGAAGTGCCATCGCTCTAATCAAAAACAAACGGAGCCGCAGCTTTCGCTTGCGCTCAACAGCTCCAGTACGGAACGTCCATCCTTGGCTGTGCGAGGTCTCCGTCTGGCCGATATTCGGTGGCGACGGGGCCTTGAACGATTGAACTGTGGTTAATTGAAGAAGCGGGAGAAGTAAATACAAGCACACCACTCAAGACGAAGTTACTATGGAGAAGCGCAGGGAGGCGGGAGTCTAACGTGGATAGGgggcacaaatcaaatcaaaagatTTACTATTCGGATTAATACAATTTTGAACACTTCATTTTGAGAGGGATTTTCATCAGATTTTCTGGCCATTATCTCACGCAAGCATGAACGGAAAGGAAGCGAGGTTTTGCACGGGATGCTGGAGGCTACTGCTGCTGTCAAGCATTCTGGTTCTACACTTGATTCCCCTCTTTGTACATGGGAACACTCTGGGGGCCAATGTCACTGAGTTGGACACCACAGCCAATGTGACATCCCTGCCCAGTAAGGTCGAAGAAGCGGCCAAAGTGAATGATGTCGTTACCAAGGTGACCTGGATCAGCAACTCAGTCAGCCCCATCGTCACAGTGACCCAGAGGCCTGGCCACATGCCCCGCTCCGAGGAGGAGCAAAGCAGCGGCATGCTGGGAGAAGGGGTGTTGCCAGccgaggaggaggtggtggcccCGCCCAGGATCAGCCCTGACTCAGCAGAGACAGAGCTCCTGCTGCCTAGCAACCCCCGTGGCACGGAGGATGAAGAGGAGCACACCGACCCACCGTGGCTGAACGCCAGAGACAACGTCTTCGACCTGGACCGCCACTTCCAAGAAGGAGTAGCCGACCTGGCCACCACCACTGCCCCTCCACCCGCCGCTGCTAACCCCTCCCGCCCGGACGTCCTCACGGTGGACTTCTTCGACCCCGCCTCTCGCGGCCGCGGCCTGGACCTAGCCccgccctctccctcctctttggCCCACGAGCTCCAGGGTGGCGACCCCACTTCCTGGGCCATGCCAGACAACTACGACTACCTCACGCCGTACGAAGACGGTGCGTCGCCCACCCCTGATGAGTACTCCTACAGCACCACTACTGATACCTTGGATGGGGATGACGACTTGAGGCTAACTGCCGGGCCTCCATCGCGCTCCAGGCCCAGGGCTCCCCCAGGTTCCGGCTCCTTCACCCCAGACAAGAGGCTGCCCAGTGgaggtgctgctgctgctccagaggGCCCTGCGGCAGCCCCTCCAGCGTTACCCGTGGATGGCTCAGACGGAGCCGGTGGCTGCCGCCAGGGCTACGTGAAGCAGAATGGAACCTGCCGCTCCCCCTgcgacacactgcccagctactgcttCAACGGAGGCCAGTGCTACCTACTGGATGGCATGGGGGTCTTCTGCAGGTGTAATGCCCAGGACTACATCTGGCACAAGGGTTCCCGCTGTGagtcggtggtgacagagttccAGGTGCTGTGTCTGACCATCGGGGCGTCGGCCCTCATGGTGCTGCTGCTCTTCATGATCATCGTCTGCTTCGCCAAGAAGCTCCACGTGCTCAAGACCGAGAACAGCAAGCTGCGCAAACGCAGcAGTAAGTACCGGCCTCCATCGGAGCAGCACAATGATAATTTCTCCCTGTCCACCATCGCTGAGGGCTCCCACCCAAATGTAAGGAAACTGTGCGACACCCCTCCTAACGTCCCTCATGCCCGTGCTTTGGCTTACTATGATAACATTATCTGTCAGGATGATCCTAATGCCCAGAACAAGCTGGAGGACCCCGTGAAGGCCCCGGTGCCCAAGGAGGACGACTCCCTGAACATCCACAACTCCCTGACCCCCAAACACGAGAACCACAAGGTACTGGGCGAGGAGAACTCCTCGGAGGTAAACTCACTGCAGAACAACATGATGTAGAAGCCTGGGTCGGGATGAGAGCTCCAGTCCTGCTCTCTATCCCAGCCACAACGTCTACAACTGCTACCACCAGCCAACCACCGTCTACAACACGGCAACACTGCCACCAAGCGGCCCACACcgctgcaaaaaaaaaacaccaccCCAGCTGAAACTCCCCCCTGACCTGCCACCGCCTATAGCGACCCCTTACGCCCAATCACGCCCCCCTGCCTCGCTGCCCTGCCCCTTCGTTGCTGTCACTCTGCTCCCCCTTACCCCCTGcccgcacgcacatacacacactagaacacacaaaccgacacaccagaacacacaaacacacacatatatgtacatacacacactagaacacacaaaccgacacaccagaacacacaaacacacacatatatgtacatacacacactcacatatacactcATATTCCCCTGCCTGCATTGGTGTATTTTGTAAAAAGAAAAAAATCATATGGAGTTTTAAAAAAGAAGTTAaacattgtaaaaaatataaaagttACTGAGAGGTTTCGATGTTTGTCTGACTAATTAAGTGAGTATGTATAAATATATGGAAAAAATGCTTGGATTGATATAAAAGAAACAACACAATGTGTCTTCGTTTTCATTGATGTGATTTCTAATCCTTTGATGTACTTGTTTTATTTTGTACTTTTTTGGGAATACAGACTTCAAAACAGAGAACAAAATCTGAGTTGTTGAAATAAACCTTTTTAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270104 lncRNA upstream 1323 23234719 ~ 23234939 (+) True G236330
TU270079 lncRNA upstream 26744 23209289 ~ 23209518 (+) True G236314
TU270077 lncRNA upstream 28047 23208008 ~ 23208215 (+) True G236312
TU270074 lncRNA upstream 30515 23205516 ~ 23205747 (+) True G236309
TU270067 lncRNA upstream 36127 23199884 ~ 23200135 (+) True G236302
TU270133 lncRNA downstream 6614 23297610 ~ 23297897 (+) True G236359
TU270099 lncRNA downstream 15859 23306855 ~ 23307684 (+) True G236325
TU270138 lncRNA downstream 19564 23310560 ~ 23310914 (+) True G236363
TU270351 lncRNA downstream 390523 23681519 ~ 23685244 (+) True LOC110514513
TU270346 lncRNA downstream 422379 23713375 ~ 23718688 (+) False LOC110514561
XM_036972422.1 mRNA upstream 8694 23210418 ~ 23227568 (+) True smarcc1a
XM_036972423.1 mRNA upstream 10173 23210418 ~ 23226089 (+) False smarcc1a
XM_021593782.2 mRNA upstream 103188 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA upstream 103188 23119383 ~ 23133074 (+) True LOC110514335
XM_021593753.2 mRNA upstream 342486 22869833 ~ 22893776 (+) True LOC110514282
XM_036972443.1 mRNA downstream 11776 23302772 ~ 23305547 (+) False elp6
XM_021593832.2 mRNA downstream 11776 23302772 ~ 23306081 (+) True elp6
XM_021593838.2 mRNA downstream 15236 23306232 ~ 23342019 (+) False LOC110514448
XM_021593837.2 mRNA downstream 21360 23312356 ~ 23342019 (+) True LOC110514448
XM_021593851.2 mRNA downstream 78008 23369004 ~ 23374440 (+) False LOC110514472
TU270066 other upstream 37187 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 55963 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 537428 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 555534 22673525 ~ 22680728 (+) False G235569
TU269172 other upstream 763345 22460540 ~ 22472917 (+) True LOC110514034
TU270145 other downstream 55884 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 59095 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 501801 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 501801 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 501801 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile