RNA id: XM_021593832.2


Basic Information

Item Value
RNA id XM_021593832.2
length 1797
RNA type mRNA
GC content 0.47
exon number 7
gene id elp6
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23302772 ~ 23306081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAGTCGAAACGCTTTTCACATACTCAGATTCTACTGCACGAAGAGAGGGACAAACTACGGTCGTGTATCATGCTACTTTTTCACAACAAACATTCGGAAAAAGAAGTAGCTATGAATAGGGAATTGTTTTGAACATATTCAATTAATGTAGTTATTATTGATGAAAATGTACTTTGAGTTGTTGTGATTTGTCCTGGATAACGCAAAAAAAAATCGTGTCAACAATCTAGCCAACTTCATAGCCTCCCTCGACAGTCTGCactactactgtagctagctaaatgtACTTTCTTGGTAGTGTTAAGCTTTCATATGTAAAGACATTGGTTAagatatctagctagctattAATAAAGTATTATCTAGCTAACTAGCAACTCACCAGAAGACATCCCAAAGATTCGTATGAGATAAATCTTCACTCCTTCGCAAGATGTTTGCAGAGCTCAACAGTATTCTCAATACTAGTCCTGACAGCTTCAAGCCGgGAGAGTTTATTTTAGTGTCTGACAAACATACAGACGCGTCCTTCCTCATTCACCATTTCCTCTCCTTTTATTTACGAGCGGGCTGTAAGGTGTGTTTCCTGGGTCTTGTGCAGTCCTTCAGTCACTACAGTGCAATCAGTCAACGGTTGGGTGTGAGTTTGACCCAGGGAAGGGAGAAAGGGCAGCTGGTGTTCCTAGAGGGACTAAAGGAATCCTTGGGGGTACTGCTTCAGGGGGAGGCCAGCAAAGAAACCCGGACAATGGACTTCCTCAGAGATCCCAGTTCCGGCCTGCGGGGTCTATATGACTTTGTGCGAGACAATGTAAGGGGGGCAGTGGGTGGAGCTGAGGAGTGGGGTCCCCCTGTGCTCCTGGTGGATGACCTCAGTGTGGTCCTGAGTCTGGGGGTCAGTGTTGGGGCAGCGCTGGACTTCAGTCATTACTGCAGAGCCACTGTCTGCTCCGAGCTGCAGGGCAGCATGGTGATGTTGGTGCGATGTGAggcagaagaagaagaggagagtgaTGATGAAGGCTCAGAGCGGCTCCTGAGGGGCCTTATACACCAGTGCAGCCTCACACTCCAAGTACAGGGTCTTCCCACTGGCTACTGCAGGGACATCCACGGACAAgtggaAGTGTGCTGGCGAGGACAATGTGACAGGCAGCAGGCCCAGAAGAAACTCTTCCAGTACAAGGTCCATGACAAGGGGGCTTCCTTTTTCGCCAGGGGGATGTCCAGTGCAGTCCTTTGAGCCCTCAATGGATCCCTTCTGCCTCCCTTCCCAGTGTTGATCCCCATTCCCTCACCTCTCAGTCACATGGCTCTCTGGGCTcaaccatagagaatgatagagaccAAAAGGCTATATTAGCATGGGCAGCTATTGTACCTccgccattttaaagtagtcaacctCATGgaacttccaacttcattggctgatccctcctggtgactGTTGGAATCATGTCCAACTGGGTCATCAGAAGGGATCAGTCAATTGtgaagaagaaaatggactacttcaaaatggagatgccTTAATGGAGCTGCCTATGCTGTCATATATGTAATGGCACAGCTACAAAGATGGTAATGATCATGAAACAGGTCGGGATCAGTTTTGAACTGGAGATGTGGTATTGAATTGAACATTGGATTTCCGCTTTAAAACCAACCCAGCACATGCATTGCAAAGCTGACATAGGAAGCCTGGGTGAATAGGTAATTTCTCAAGCCACATGTGAACTGACCTGACTAGGTTGCACTTGTgttatacaaaacaataaacggcACATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270133 lncRNA upstream 4875 23297610 ~ 23297897 (+) True G236359
TU270130 lncRNA upstream 20505 23281412 ~ 23282267 (+) True G236356
TU270104 lncRNA upstream 67833 23234719 ~ 23234939 (+) True G236330
TU270079 lncRNA upstream 93254 23209289 ~ 23209518 (+) True G236314
TU270077 lncRNA upstream 94557 23208008 ~ 23208215 (+) True G236312
TU270099 lncRNA downstream 774 23306855 ~ 23307684 (+) True G236325
TU270138 lncRNA downstream 4479 23310560 ~ 23310914 (+) True G236363
TU270351 lncRNA downstream 375438 23681519 ~ 23685244 (+) True LOC110514513
TU270346 lncRNA downstream 407294 23713375 ~ 23718688 (+) False LOC110514561
TU270347 lncRNA downstream 407294 23713375 ~ 23718688 (+) False LOC110514561
XM_036972425.1 mRNA upstream 11776 23236262 ~ 23290996 (+) False LOC110514420
XM_021593838.2 mRNA downstream 151 23306232 ~ 23342019 (+) False LOC110514448
XM_021593837.2 mRNA downstream 6275 23312356 ~ 23342019 (+) True LOC110514448
XM_021593851.2 mRNA downstream 62923 23369004 ~ 23374440 (+) False LOC110514472
XM_021593845.2 mRNA downstream 62924 23369005 ~ 23374440 (+) False LOC110514472
XM_021593855.2 mRNA downstream 62925 23369006 ~ 23374440 (+) True LOC110514472
TU270066 other upstream 103697 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 122473 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 603938 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 622044 22673525 ~ 22680728 (+) False G235569
TU269172 other upstream 829855 22460540 ~ 22472917 (+) True LOC110514034
TU270145 other downstream 40799 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 44010 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 486716 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 486716 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 486716 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile