RNA id: XM_021593837.2


Basic Information

Item Value
RNA id XM_021593837.2
length 6697
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110514448
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23306232 ~ 23342019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGAGTTGTGTCGCAATAAAGCCTGCAGGCATTAGTCCCAGCTGACATTGACTCAATAATGGTCTGTACAGTTATGGGGCATTAGAGTTGAGGAGCAAGTACTCGGTTCACTATGGGAGAAGTGAGCTGAAATACCATCTTGCTGCTTCTCAATGCAGCCTAAAGTCTCTGCATTTATGGTGCTACTTGCCAGGAGTCTTAGCTTTTTTATGTTGGGTTTTAAGACCCCTTACACAGGTGTGGATCATGGCAATGGACTGTATAGGATCCAGTGATGCCTTCAAACTGGGGATTTTAGGAAGCATCGTTAGGAGGTCCCTGGATGCCCCGCGGCGCTCGGTCCTCGCCCACCCGCGCACGGCGCCCCCCGATGGCCGGCAGCTGACCCCGCCCCCCAGGATGACGGTGAGAGAGCGGCTGCGGGAGAAGATCTCGGCGGCGTTCTACCGCCACGGGCTGCTGTGCGCATCCTATCCGGTGCCCATCATCCTCTTCACCTCCGCCAGTATCCTCGCCTGCTGttACCCCCTGCTGCGGCTGCCTCTGCCGGGAACCGGGCCGGTGGAATTCACCACACGGGTCCGAGATTACACCGTTCCTTCCCATGAGCCCCAGGGAGACCTCGGCGAGCAGCCTGACTGGTATCGGGGTCCTCCGGTGGCCTACATCCAGCCGGTCCTGGTGAAGGCAGCTGTGTCTCCCTGGGACAGTACGCTGGTCCCTGTGGACGTGTTCCGCTCCCCACTGGGCCGCGTATTTAGCCTGCTGGAGGAGATCCGCAACCATGTACACGACGACGGTTCTGGGATCAGGAGCTTGGAGGCGCTCTGCCTGCAGGTGACGGACCTGTTGCCGGGGTTACGGCGTATGCAGAGAGTGCTGCCGGAGCACGGTTGTCTGCTGGTCTCCCCCGGCAACTACTGGCAGAACCAGCGGGAGTTGTTTGACTCTGACCCCGACCTGCTGAAGACCGTCCACCAGCACGAACCCAAAGGACTGCACACCTCCGCCAcactgagagacctgCTGTTTGGCGTCCCGGTGAAACACACAGGGGTGAGTCTGTACAGCAGGAAGAGGGTGGTCACCTACACCATCACCATGGTCCTGGGCAGCTACGACGCCAGGTTCCTGTCTAGCCTGCGGGCGCGTCTCCGCCAGCTACACCCCTCGGTGAACTGCAGCCTACGCGAAGACCACATGGTGCACGTGCACTTCAAGGAGGAGATAGGCATGGCCGAGCTCATCCCTCTGGTCACCACCTACATCATACTGTTTGCCTACATCTACTTCTCCACACgTAAGATTGACATGGTGAAGTCAAAATGGGGCTTGGCGCTGGCTGCTGTGGTAACAGTGCTCAGCTCTCTGCTTATGTCTGTGGGGCTCTGCACCCTGTTCGGCCTGACGCCCACACTCAATGGAGgtgagATCTTCCCCTATCTGGTGGTGGTGATAGGGCTGGAGAACGTCCTGGTTCTCACCAAGTCTGTGGTGTCCACCCCTGTTGACCTGGAGGTCAAACTACGTATCGCTCAGGGTCTTAGTAATGAGAGCTGGTCTATCATGAAGAACATGGCCACAGAGCTGTGCATCATCCTCATAGGATATTTCACCCTGGTGCCTGCtatccagGAGTTCTGTCTGTTTGCTGTGGTGGGACTGGTGTCTGACTTCTTCCTTCAGATGTTTTTCTTCACCACAGTTCTTTCCATTGACATCCGACGCAtggagTTGGCCGATCTGAACCGGCGTCTTCCGGCCGAGGCGGGGATGCCCCTTCCCAAACCGGGCCCCCTGCGCCCTCGGGAGGCGCCTCCTCCCCCACGGCCCTCGCCCCACACCATCACCCTGCAGACGCCCGCCTTCAGGAACCTGCGCCTGCCCAAGAGGCTCCGTGTGGTCTACTTCCTGGCCCGCACGCGTCTGGCCCAGCGCTTCATCATGGTGGGTACAGTGATCTGGATTGGCATCCTGGCCTACACGGACCCCGCTGGCCTCCGTACCTACCTGGCAGCCCAGGTGTCAGAGCAGAGCCCCCTGGGGGATGGCGGGGCCGGGGGTCTGCCCCCGCACCTGGGAGTAGCCCCGGTCTTCCCTGGACCAGGAGGGGACCCCGTCGGCACCCTCAGTGTCCTCCCTGCCCCCGCTGAACCCACCCCGCTTCCAGAGAACCAGTCCCAGGGCCACCACGGGGCCCCCGGGGAAGGAGTACCCCTGGTGCCCCAGATCAGCTGGGGGGCGGAGGATGAGGAGGGCTGGAGGAGGCTGTCTTTCAGACACTGGCCCTCGCTCTTCAgctactataatattactctgGCAAAGAGATACATCAGCATCCTGCCTGTCATCCCCATCACGCTCCACCTGAGCCCCCGGGAGGCCATCGAGACACGTCACCCCCAGGACACACGCCACCCCCCGCCGCCCAGCctcaaaacgaatgacctgcccGCAGACCTCACGCTCTACAAggtAGCAGCTCTGGGCCTGGCGGCAGGGGTTCTGCTGGTGCTGCTGCTCTTCTGTCTCTACCGGGTCCTCTGTTCCCGCAACTACGGCCAGAACGGCGTGGCCCACGGGCGTCGTCGTCGCGGTGACCTGCCCTGCGACGACTACGGCTACTCGCCACCCATCAGCGAGATCTCCCCCCTGCTGCTGTGTGGACACAGCATGgatatAGAGTGTCTGGCGAGTGACGGCATGCTGTTGGCCAGTTGTTGTCTGGCAGGACAGATCCGTGTGTGGGACACTCAGACTGGAGACTGCCTCACCGTCATTCCTAAACATGGgCTGCGGCGGAGTAGCAGCAGTGGCTGCTGGGAGCAGCGGGATGGTTGGGACGCTGTGGGTGTGGCCGAACCTGAAAATCTGGGGGGCGGGACAGAACCAGGGGGCGGGGTTTTCGACGAGGGCGAGGGCTACCCCCTCAGGCGGCGGACCACCCCACGTCCTGCCCTCTTTGAGAACCAACCCGACCTCACCCCCCTCATCGACACCAACTTCGACTCCCagcccccctcccacctcctcctcaccccgCCTAGGGATGGCTTTGACTTCGGGGGGCTGGTGGAGAAGGCCTACCTGGAGCACGAGCCTCCCTCGCCGGGCCTCACGGCCTCCTACCCCTCACCCCTGTCGGGACCCCCACCCCAGAGGAGACGCAGCCTGGGGTACATCCAGCCCCCTGCTCCACAGGGCCAGGAAACCCCGGACTGGGAAAGCGCCGTGTGGGCCATGGAGCTCCGGGGGAACCTCATCGCTGCTGGGAGGAGCAATGGCAAACTAGAGCTGTGGGACGCAGTGGAGGGCTCGTTACGCTGCAGTAATGAAGACGGCGTCTCGGGGATCACGGCCCTGGCCTTCCTCAACAACAGGATCGTGGCGGCCAGACTCGACGGCTCTCTAGACTTCTTCACTGTCGACATCAACAAGCCTCTGGGCTTACTGCAATACAGAGGTCCCCCCGGGCGTAGTAACATGCCGCCCTCGCCCTGCTACAGCAGTGAGGATGTGATCTCATGCCAGCTGACGCGCTCGGTGCAGTGTGCCCACCAGAAACCCATCACGGTGCTGCGAGCCGCTGCCGGCAGAGTGGTCACGGGCAGCCAGGACCACACGGTCAGGGTATATCGTCTGGAGGACTCATGCTGTCTCTTCACGCTCCAGGGCCACTCTGGGGGAATCACTGCCATCTACATAGACCAGACCATGGTTCTGGCCAGTGGGGGGCAGGATGGAGCAATCTGTCTGTGGGATGTGCTGACGGGCAGCCGGGTGAGCCACGTGTATGGTCACCGCGGCGACGTGACCTCACTGGTGTGCACCACATCGTGCGTGATCAGCAGCGGCCTCGACGACCTCATCTGCATCTGGGACCGCAGCACGGGCATCAAGCTCTACTCCATACAGCAGGAGGTGGGCTGCGGTGCCAGTCTGGGGGTGATCTCTGAGTCTCTCCTGGTGACAGGGGGCCAGGGCTGTGTGTCCTTCTGGGACCTGAACTTCGGGGACCTCCTCCAGACGGTCTACCTGGGCCAGAGCAGCGACGGCCAGGGGGTCCGCCAGCTCGTGGTGCTGAACAACGCCGCCATCGTCTGCGACTTTGGCTCCGAGCTCAGCCTGGTCTACGTACCCTCGGTGCTGGAGAAGCTGGACTGAGCAGAAGCAGAACTAGGACAGGCGCCACACAGTGGCCTGGAGGAGTAGACAAAATGGTCAGTACTGACAATGGGGATATATGCAAACTCAACTCATTTTGGCCCTACACTACGCTGCAGTTGGTCAATCTTCTTGGAAAGAGTTGTGGCTCATTCAGATTGTTAGCGCTTCACCTGATTTAGCTGGCAGGGCATTTCTATAGCAATACATAACCTTTTTTATAAAGCTAATGTCTGGTTGGAGAGACAGATGTACAGACAGACTTACAAGGGGTCAACCTGCTACAGGGTGAGGTCTGTCTGACCAGAAAGATGACCCTTGACCTTGTTACTAGCTTTTATCCAAGCATTGGAAGGTTTGGGGTACACACACCCCAAGGGGGTTCCCATCCAACAATCAGACTGTCACTGCACACTATGCTGCTGTCATTGGCGGAGTGTTTGATACCACGCCAGCCAATCAATGTAGTGCAGCTGTAGCAGGCTCGTGTCATGAAGTCTGAGGGCCGCTGGGCTAAGCAAAGCAGTTattagcatgtgtgtgttttgtgtcctgAGGAAGAAACAGTCCCTTTTTATGGTGAAAACATTGCTGACAAAAATCAttcattattgtgtgtgtgtgtgtgtgtgcgcgagagaACTGGATACGATTACTGTAATGAAATGCACCTTGAGAGGGGGTTGTTTTTATGTTTAAATCTATTtattagtgatacatttttaagtAACAATTTGAGGTGTGCATAATATAATGTGGAGTTGatgtcattttttaaaaaacattggTTATGATGAGATCAAGATTTGTAATAATATTTTGGAACTGAAAACGCTTAAGTGTTTTCTTGGCGTTGGGGATTGAGGGGGAGAGGTTCCTTGCCTTACCCCAGCTTCAAGCTCTGATTTTAGGGCTACTGTTGCTGCAAGAGGACCCATCTGGCCCCTAAGAGCCCCTTAAACTGTAATAGGCTCTATACTTTCTGCTTGAATTTGAGATTTGCATCTGAAGGTGTGGCAGCTCTACATTGGCTGCTCTCTTCCCATGTCGACTGTTCCCAGGATGTAAATATTCAATTGCACGGTGTTATGTTAGTAACATTTTCATGCTACCTTTGTATGTCTTGTTCTCTGACAAAAGGTTCCATTGAGGAAATCACGTTACTTTTTTAAATACCTAAAATGGCTTCCTCTTGAAAAAAAATCTTACAACTGTGTTTCTCTGTCCGCTATGTTTTTCCCAATTCACTGAAAAGGTATATTTTCTTTCGGTCTTATATCTGTAATTCTCTGCTTGTGAGTTTGAGAACCCTATCAGGCATAAAAGGAGAGGATGGGTAGTGTACCAGTAATGTGGTTAACTCCAACTTGTCTTTTCATGTGAGCAAAGGAGTCAGGGGGGGTCTCAGACTAGGAATATGATGGTACCCTCTAGGTTGGAGCCTCTCTACTAATAACTCAACCTTTCTCCCAGCCCGTTACCTCTGAGTGACTGTAGCGCTAGCCTGCAGACACACGCAATGCAGAGAGAGCGTAGTGTACTTGACCGTAGACGTTAGCCTACTTGGTTACTTACACCCATAGCTGAATGTAGATGCTTGATATTGAAAAGCAAATCCACTCAACTTCAACCAACAGAAATATAACACTAACTTGTGCACTAACTCTTAACCCTCTCAAatgcacatgctcacacacacactaggcactTTGTAACAATGTATAGAAAGACATTCAGAAAACATAAAAATGCACACATCAGACTTGTGAATGCACGGGTGGACAGCTTTAGTCCTCAAGTGTTGCGTTGTCTGCTGGTTTATGATGAATTGAAGAGAAACGAAAACCCAGACACACGCCATCCCAGAAGGACTGGAGTTGTGCACCTGTGTGTAATGGTTGTAATTTATTTCCTTTTTTTAATGTACATAATAAGTAAATGCTTTAGAGCGTGTCGATTCACTTATAAATTGTAAGGATATAAACTGTTGCCCGAGTTAAATATGGTTGTGTTTCAAGTCCTTTTAAGCTGCCTTTCcttatctccttgcttgcaaagaATGATACGATAGTTAtatgacacccacacacactgtcacaatATGTGGCCTATGCAGGAATGAAACCTCATCACTCTGGGGCTGCGAGCACTATGCTCCCAACAACATTGGAATGTTTATGGAACAGGAGTTTCTACATTTGTTTTACAGCATTCTGCCACTGTAGTGATGAAAGGAGATGAGAAGGGAAGCATTTTAGATAATTGGAGCACAGCCCATGTCCCCTTGATCTGACCCTTTTGGTCCTACAAAATAGTTGAcggagggaggggcagaaagaaaCCGGTGTAAATATTGTTTTTGTGGAATCATAGGCCTGTTCTGCCTCCCTCCTCCTGAACCCCCTCCCTTCGGTTGGCTAGGGTGCCACAGACTGTAGTGGCGGTAGCAAATGTTCTGGGCCATATTACTATTTTTAACACGGGAGCAAAACTTTTTACTAATTTCCAAATAAAGAGGCTTTGATACCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270138 lncRNA upstream 1442 23310560 ~ 23310914 (+) True G236363
TU270099 lncRNA upstream 4672 23306855 ~ 23307684 (+) True G236325
TU270133 lncRNA upstream 14459 23297610 ~ 23297897 (+) True G236359
TU270130 lncRNA upstream 30089 23281412 ~ 23282267 (+) True G236356
TU270104 lncRNA upstream 77417 23234719 ~ 23234939 (+) True G236330
TU270351 lncRNA downstream 339500 23681519 ~ 23685244 (+) True LOC110514513
TU270346 lncRNA downstream 371356 23713375 ~ 23718688 (+) False LOC110514561
TU270347 lncRNA downstream 371356 23713375 ~ 23718688 (+) False LOC110514561
TU270349 lncRNA downstream 371356 23713375 ~ 23718688 (+) False LOC110514561
TU270348 lncRNA downstream 374326 23716345 ~ 23718688 (+) True LOC110514561
XM_021593832.2 mRNA upstream 6275 23302772 ~ 23306081 (+) True elp6
XM_036972443.1 mRNA upstream 6809 23302772 ~ 23305547 (+) False elp6
XM_036972427.1 mRNA upstream 21360 23236262 ~ 23290996 (+) False LOC110514420
XM_021593851.2 mRNA downstream 26985 23369004 ~ 23374440 (+) False LOC110514472
XM_021593845.2 mRNA downstream 26986 23369005 ~ 23374440 (+) False LOC110514472
XM_021593855.2 mRNA downstream 26987 23369006 ~ 23374440 (+) True LOC110514472
XM_021593874.2 mRNA downstream 335343 23677362 ~ 23696446 (+) False LOC110514513
XM_021593880.2 mRNA downstream 360646 23702665 ~ 23708816 (+) True LOC110514526
TU270066 other upstream 113281 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 132057 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 613522 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 631628 22673525 ~ 22680728 (+) False G235569
TU269172 other upstream 839439 22460540 ~ 22472917 (+) True LOC110514034
TU270145 other downstream 4861 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 8072 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 450778 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 450778 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 450778 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile