RNA id: XM_021593855.2


Basic Information

Item Value
RNA id XM_021593855.2
length 2648
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110514472
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23369004 ~ 23374440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCCATATTTGattctgcaaaaaatataaatattatgtTTGTTTAGCTGTGTAGAAGTTACGAAAGTGTAATAAACACACATTCGGCGGCAGAAATTAGAAGAGTTGCACTTTTAGCTAACGACTAGCTAAGATGTCACTGGTGGACCTGGGGAAGCGGCTGCTGGAGGCTGCACGGGCAGGGCTGGATGATGATGTCAGGACCCTCATGGTCAATGGAGCTCCCTTCACCACTGATTGGCTGGGGACTTCCCCGCTCCATCTAGCTGCTCAGTACGGACACCACTCCACGGCTGAGGTGCTTCTCCGAGCAGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCACTCCACATGGCGGCCACAGAGGGCCACTCTAATATAGTGGAGCTGCTAGTCAGTAGCGGAGCGGACATCAACGCTAAGGACATGCTGAAGATGACAGCCCTGCATTGGGCGGCCCAGCACGGTCATAGAGAGGTGGCAGAGCTGCTGCTCAAATATGGAGCAGACGTCCACTCCCTCAGCAAGTTTGACAAGACGCCCTTTGACATCGCCATGGATACCAGCAACACTGAGCTCATGATACTGTTACAGGATGGCATGCAGAACCAAGTGAACATGAACCCCGAGCCCCAGTTCATCATCTCCTCTGCTGGGGTCGTGAACCTCTCTGACCTCGTCAACACCACCGCCAAGTCAGGAGAATCTGTCTCTACCACCTCAGTCCTGGCAACACTGGCAGCCCTGGCAGAAGCCTCAGGTCCCATGGGTAAAAATGCAGGCAAATCTGAGGACGCAATCGCTGCAGATTCTGTGGATTCGGCCATTCAGCATGTAGTGGGTGATGGAGGTCAGAGGGTCATCACCATAGTGACGGACCAACACGGCAACTTGCAGCCAGCGGGACTTGGGCAGCAGTTCTTTGTCACTATGCAGGGGCAGCAAATGGTGGCAGTCCCGACTGGTCAGATCACAGAGGAGGTGGTGGAACAGGAGCCTTATCCCTCTCCTGCACGCAAGAGGAGAATAGAGCCTGCAGCCATCCTAACCAGACCCAAAGACAAGAAAGCGAAGTCGGGGGACAGCAGTCGGGAGCAGCTCCAGAAGCAGTTGCAGGAGGCCAACCGGAAGGCCCAGGAGTACCGCACACAGCTCCTACAGAAGGAGCAGGAGGCTGAGCAGTACCGCCTCCGACTAGAGGAGGCCATAGAGCAACAACAGAGCAACAATACCAGCAATGCTACTGGTTCTACCTGCACAGGTGTCCAGGAGGCAGAAGAGGAGGTGGTCCAAATGGAAAAACAACACGAGACCGAGGAGAGAGTTGTGGAGGAGGACAaagtggaaggggaggaggacgTCCCATTTCCGGAAGACACCATTCTGGTTAAAGTGGAGGAGGAGCTGGATTCAGGGGAGGGAGAACAGATAACAGTGGATGATACAGAGGAAACGGAGAAGGCTTCAACTAAGGTCACAACGACCCCCAaacgggggagagggaggggacgagGACGTGGAAGGAGGCGGTAGTCAAGCGTCCCTCTGTTCTCTTGGTGTTCTCTCATGATATGTCTTGTTTTATGCATTTATATTAATATTAACGGTTATTACTTGTTTATTTTAGAACGATAACATTGTATTTGTAACTAGGTTTTGAGATTATTTTATTTACTTGCAATACTTTTGATGAAGAAGCCATTGGCGAGCACTTGTAAGCTAACGCTGAGCCCTGTAGGAGGAGTTAAGGATGCAGATGGCTCCACCGTGTACAAAAATGTCTGTGAATTTAGAGAAAGTAAGAAAAGTTATGTTTGCATAGGAGTGTAAATACTGCAATGTGGGTTTGATTGCACTGTGCATTCATTCTCCTAAGAATAAGGTTTGCAACACATTCTAATATAGGATATTCAATCCCCAgcatttctgtttcatgtcttcAGCGTCATGTTTAAAATAGAATCAAGTTAGCTCAAGTGTATAGTGCTAACTGAGAAAATGCATCTGATTCTTCAGAAAATGTTCTAAGGCTGGCTAAGTTCTAGTTATTTGCGTACctgtatgtgtgagtgtttgggcatCTGTGGGTGAGGTCGAGGTGTGGGATATCGGTGTTTCTTTGCTAGATGGCCAGCTTTCTTAAATCTGTCTTGAATATCCTATTCTAGTACTATTTTAGCTGCAGACCACTCAGACACTAAGATACTGTAGGTTTTCCTTTTTTGTTCCAAGTAGTGTTAGATTTTAGAGTTAATGTGTAAGTCACTGTTATTCTTAAGCTCTTATTTTTGTTCCTTTTGTCATTTTAAAGCATTATACTCTGTATAGACCAGCATCTGTCAATAGACATTGATCTGTCATCGCAGTCCAGTTTAAACTAATACTCTCAGAAAAATATTGTTTACATATGCTCTCTTTATGGCTGGTTAATTTGACACTAAGTGCTTCTTTATGAACATTATAAAAGCACAATCAGGGGTTATCTTTCAGTTGgttaggagaaaaaaaaaatacaattttgctACAAAATAATGTTAGTGAGAAAATATGGGAAATTGTTTTCTATGTTGAATACCCCTTTCTTAAATGTATTTTTAGAATTCAATAAATAAGCGTTTATTGTTATTCTATCCATGCA

Function

GO: NA

KEGG:

id description
K09454 GABPB; GA-binding protein transcription factor, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270138 lncRNA upstream 58092 23310560 ~ 23310914 (+) True G236363
TU270099 lncRNA upstream 61322 23306855 ~ 23307684 (+) True G236325
TU270133 lncRNA upstream 71109 23297610 ~ 23297897 (+) True G236359
TU270130 lncRNA upstream 86739 23281412 ~ 23282267 (+) True G236356
TU270104 lncRNA upstream 134067 23234719 ~ 23234939 (+) True G236330
TU270351 lncRNA downstream 307079 23681519 ~ 23685244 (+) True LOC110514513
TU270346 lncRNA downstream 338935 23713375 ~ 23718688 (+) False LOC110514561
TU270347 lncRNA downstream 338935 23713375 ~ 23718688 (+) False LOC110514561
TU270349 lncRNA downstream 338935 23713375 ~ 23718688 (+) False LOC110514561
TU270348 lncRNA downstream 341905 23716345 ~ 23718688 (+) True LOC110514561
XM_021593838.2 mRNA upstream 26987 23306232 ~ 23342019 (+) False LOC110514448
XM_021593837.2 mRNA upstream 26987 23312356 ~ 23342019 (+) True LOC110514448
XM_021593832.2 mRNA upstream 62925 23302772 ~ 23306081 (+) True elp6
XM_036972443.1 mRNA upstream 63459 23302772 ~ 23305547 (+) False elp6
XM_036972429.1 mRNA upstream 78010 23236262 ~ 23290996 (+) True LOC110514420
XM_021593874.2 mRNA downstream 302922 23677362 ~ 23696446 (+) False LOC110514513
XM_021593880.2 mRNA downstream 328225 23702665 ~ 23708816 (+) True LOC110514526
XR_002472132.2 mRNA downstream 338931 23713371 ~ 23718761 (+) False LOC110514561
XR_002472136.2 mRNA downstream 338931 23713371 ~ 23718761 (+) False LOC110514561
XR_002472134.2 mRNA downstream 338932 23713372 ~ 23718761 (+) False LOC110514561
TU270150 other upstream 18191 23350091 ~ 23350815 (+) True G236372
TU270145 other upstream 19628 23346880 ~ 23349378 (+) True G236370
TU270066 other upstream 169931 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 188707 23149152 ~ 23180299 (+) True G236271
TU269259 other upstream 688278 22673525 ~ 22680728 (+) False G235569
TU270428 other downstream 418357 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 418357 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 418357 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other downstream 418357 23792797 ~ 23795077 (+) True LOC110514613
TU270506 other downstream 534310 23908750 ~ 23929087 (+) True LOC110514733

Expression Profile