RNA id: XM_036972471.1


Basic Information

Item Value
RNA id XM_036972471.1
length 6239
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110514498
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23406253 ~ 23563491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAAGAAAAGGTTTGAACAAAACACGTCTCAAACAAGGTCTGGTACTATCCACCCCCTTTCCATTGGACCGACTGGCTGCCAATTCAACACATTTGGGCGTGTATTCGCCGACGCTGCTCTTCGCTGGGTGAAGTATGTTGTGATTGCAGTCCAGCTCGAGCGTGCGCGGGTCTCTGTCATAACAAAGGGCGCTCTTTCGCGCTCTGGGAATACGAGCCTTTTTGGAAAAAAATAACTAATCTTGTCTCAACGCTTCTGTAACACTGGTCTCTGTCCTGCAAGAATCAAATTATTGTCAACGAAACAAGATAGCCAAAACGAAAGAAAAAGATTGTGGATGTCTTCACTTGGGGTGGCGATCCTAACCAGCTAGTGCCAGTCATCTATCCGTGTCAGCTGGCTGAATCTCTACAGTCAAATTTGTTGAAAGTTTAAGgTGGTGGTGTGCCTGCTGTTGGCCATGCTGTTCTGGTGAGGTGTGGTGAACCCCTGCCAAAATGAGGCTGGTGCCCGGGTCGCCTCGGCCCCTCCCCCTTCTGGCGGTGGGCCTGGCTCTAGCCCTCACAGCCCTCTTACCTCACCTGGCCATGGGAGTCACACCCTTCCCCCAGGACCTGGAGCCAATCAGCATTGTGGGGAGAGAACACTCCTACCTGTACCCAAGCTTCCATGGCCTCATGTCGGACAACGATACAGTACGACTGGGCCTGGACTTCCAGAGGATGCTCCGGATCAACCACATGCTCTACATCGCAGCCAGGGATCATGTGTTTGCTATCAGTCTCAGCGCCTCCTCTGAGCAGATCGTCCCACAACAGaAATTGACTTGGAAGACAAAAGATGTGGATAAATGCACAGTGAGGGGGAAGAACAGCGATGAGTGCTACAACTACATCAAAGTTCTGGTTCCACGCAACGATGAGACGCTATTTGCCTGTGGGACCAACGCTTTTAACCCCACCTGCCGCAACTACAAGatgTCCACACTGGAACAGGACGGTGAGGAGGTGGTGGGTCAGGCCCGCTGTCCCTTTGAGTCTCGCCAATCCAACGTCGGCCTCTTCGCTGGTGGTGATTTCTACTCGGCCACCATGACAGACTTCCTGGCGAGTGATGCAGTAATTTACCGTAGTCTGGGAGAGAGCAGCCCGGTGCTTCGTACCGTGAAGTACGACTCCAAATGGCTACGAGAGCCTCATTTCCTCCATGCCATTGAGTACGGGAACTACGTGTACTTCTTCTTCAGTGAGATTGCTGTGGAGTACACCACACTTGGCAAGgTTGTGTTCTCCAGAGTGGCTCGTGTATGTAAGAACGACAACGGAGGTTCTCCCAGGGTTCTAGAGCGTTACTGGACGTCGTTCCTCAAAGCGCGGCTCAACTGCTCGGTGCCGGGCGATTCCTTCTTCTACTTTGACGTTCTGCAGTCGCTGACCAACGTGCTGCAGATCAATCACAGACCAGCCGTGCTGGGGGTCTTCACTACACAGGCCAACAGTATCACAGGCTCAGCAGTATGTGCATTCTACATGGATGACATTGAGAAGGCCTTCAATGGGAAGTTCAAGGAGCAGAGAAACAGTGAGTCAACCTGGACGCCCGTGCCTGAGGAGCAGGTACCCAAACCCAGaCCAGGCTGCTGTGCCGGCGACGGCTCTGCTGCTGCCTACAAGTCGTCCACGACCTTCCCCGACGACACCCTGACCTTCATCAAGAACCACCCCCTGATGGACGAGGCGGTTCCCTCCGTCAACCACCGGCCCTACTTCACACGCACAACCAGCAGGTTCAAGTTAACCCAGCTAGCAGTGGATACGTCAGCTGGGCCCTATAAGAACCACACGGTGCTGTTCCTGGGGAGCGAGGACGGCAGGGTACTAAAGATCCTGGCCAGCACCCATCTCAACGCCTCCTTCAGCACACAGCTACTGGAGGACATCGATGTCTACAACCCCACCAAATGTAACATCCGCGGAGAGGACAGACGGGTTCTGGGATTGGAGCTGGACAGGGAACATCACGCCCTGTTTGTGGCCTTCTCCAGCTGTGTGATCCGAGTACCTCTGAGCCGCTGCAACGACTATGGCTCCTGCAAGGAgAGCTGTCTGTCCTCGAGGGACCCTTACTGCGTGTGGCAGAGGACGGGGAGCTGTGCTACGGTGGTGCCCGGATTCAGGGGCGGATTTGAGCAGGATGTGGAGAACGGCTACCCTCACTACCCAGATAGCTGCCACGACGTCCTGGCGACCACACGCAAGCAAAACACTCTTGCTGATTCAGCATATGGGAAGACCACACCCACAACAACTGCCAGCACAACCAATCAGGTGGCCCCATTCCCAAAGGTGGCAGGTGACTCTGAAAGAGGTACAGGTCCAGATGGCGGTCCTCCAGTCCCAGTTGGGGACCAGGGGTCACCTGACTCGGAACCAATCAGTGTGGAGATGGAGGGTGTCCGACGGCCTCCCGAGATGGAGAAGACCAACCACAGTGTCCACTACACCCTGCTGATCGCCTGTGTGCTGGTGGCCTTTGTCCTTGGAGCCTTCCTCTCAGGCTTTCTGGTCTCCTGCTACTGCAACCACACCGGCAACAAGACCAAGAGGCTGGCCAAGGACCCAGAGGCCCCCATCCCTCACGCTCTGTCCCTACGCAGCCTGGCCAAGCTCAATGGCCTGCTGGACAGCCAGAACAAGGAGGATAAAATGGAGGTGTCCTCGCCCAAGCTCTACAACTCCTTCTTCCAGAACGGGAAGGAGCATCGTCAAGGAGCACCCAGACGGAACGGTggtcaccacccagggatgaccaTGGGAGACCTGGTTCACCCCCATCACCTACACCACTCTTCGGAGCTCTCTGGTCTGCCCACCCCAGACTCCACCCCTGAACTGCCCATCAAGAACATGAAGGCTTTCAAGAACCAGTGGGAGAAGAACCAGAACTGCAACAATGCCAAGGAGCCCAAGTCCCACAACATGGGACAAGGTTCCAGGCCCAGCTCAGGCCTGCTCCACCAGCAGATCTACCCCTACTCTCGCAGCTTCTCCAATGGGCAAGCTCTGGCCAATGGGCATGCCTTGGTCGGTGGACCACAGCACCTGGAGGAGCGCAAGATCCACAATACTGAGCGCATGTTGGTCCAGCAGCCTTACCCCTGCTACCCGCAGAAGGTGATGGAGGTCACATCGCTGGACGAGCTGCTCAAACACATCCACGAGGCCAACTCCAGCAAGAACACCCAGGTCATGACTTCTTCCGGCCTGTCAGCCAGCGGCGGGTGCCATGGGAGTCAACTAGCTTTTGCCAACCGCATCCAGCCGCACATCCCAGAGACCGAGTCGGCGCCTTACTACAGCTCGTCCACCCTGCCCCGAGACAGCCTGACCCGCCGCATGGACGTACCTCCGGACATGCCCCCTCACCACCAGTCCACCCTGGAGCGGAGGCACTCTTCCCAGAGACACTCACTGATTACCGCTGCCACTAAGATTGCCAACGGAGGGGGTGGTGGAGGGATGGTTCACCGACAGCAAAGCTTCAGCCAGCGTAATGGCCACCAGCACCAACCACCCCCTATGCTGGCTCGAATGAACTCCACCGGCAGCGCCTGCGAGATCCACTACCCGCTCATCCCCAATGGGTACCTGACACGCCAGCAGAGCTACAATGGAGAGCAACAGGAGGATACCGGAGGATACCTCCACCGGGGGGCCATAGTCCGCCGGACCACCTCCCTCAAACCCGATGTCCCTCCCAAACCCCTCTTCATCCCTGCCTCCTCTCCCGTCAACCAACAGGGAAACTTCAACTactgaggagaaagaggagaggaggagaacaggacaAGAGTGACTGTGCCTCGTCCTCTCCTCTCAATGGGTGAAAAGTGGAAGACGTGCCCTTGATTTTCTGGCAGCCATTCTCGCTGTCGACAAACCTCAAACAAACTTGTGATTTCCCCCTTTTTGTCCAATTTAATATCTTTGTACCATATTGGTATTGCTCAACTACTTGCTTATAGAAGGTGAGGGACTATGGTTGGTGAAACGTGACCCCCTTACATTATGCTGCCAATGTCCTCAGTGTGGATTTACCATGCAACTTAGTTATGGAAGGGTTTGCCATCAAACATCGGACAGCTTAAGATTCAATCTAGAGCTTCTTGCGATGCCTATGAAACTTGCTTTTGCTTACCTTTTTCTTATGTAGTGTTGACAAACAGTCCTGATCCCCCTAACGTGTTTctatatatgcatgtgtgtgtatatatatgtgtgtttatATCTACAccgtatatgtatacatatacatatgcaGTATATGTATCCCGTGAAATGACATCAACAAAACTCCTTTAAAGTTAGCTCTGTCTTTTTGCCTTACTTTGAAACTGAACCCATTATGTTGAAATACATTACTGGTTGGTGTTTGGCATCTCAAATAGAAGTTCTCGAAATGAGGCAAGGCCCCGCCTGCCCCTGTTTCAGCATGGTTAGTATGTGGACTAGGAGAATAAGTAATCATTTACCATATTAACAAGTTCATGGTGAATGTACTACTCACATTCAAAAAAAGAGCCAATATGGTGGATACTGACAAGCAAAGGAAACTACTCAAAGCAACTATGCTAGGCGGTTCTCTTTTTTGGAAAATGGAGACCCTACTATCCTGCCAAGTCCTGAGAAACAGATGAAAGGCATTAATACAGCTGGTCTATGAAGTACGGTCTACTACAATTCCTAAAGAATGTTTTTATCACATTGGTGCTTAGTTGATCCTCATAAATTCTAATATAATGATAATGTATCACACCCAAAGAGGACCAGACACTCAACCCCCAAAGAATCAGGATCAAGATCAGACCATCCACCCCCAaaaaacacaacatggtacagACAGCAgttattataattattaacttTGGCTATTGGTTGTAAATAAAGGAATAATACTAGCCAAATGTTAATTGTATGTGTAAATGTGTGCCTTATTTAATATAGTATGTGGTATGGGGTAGGGGTAAATGCAAGGCGCCAAGATGCTATATAATAGGTGttcgattttttttttgttatggTCGTTCGGAATGTGTCATATCTATTGTAGATTTGTATTTCTAACTAGGGGTTTTTGATATCCCTGAACTGTGAGCCTGCCAGCCCTGGCATAGCGACTACCACAGCTTGAGGCTGCATCTTCTTTGTTTGCCTCCTTTTCATGTGTTTTCACTGGGTTGGCTTTTTCCCTGATTGCTAACTTTACCTTTTGATTGTTTGTAGCATAGCAGGCTACTCAATAGATTAAAAGGGGGGACATCAGGTCCCTCAGATGTTAAGATTATTCAGGCTCTCTGATACTCCCTACATATCACTTGGTCTCAACCTCAACACCACAGGAACACCACAGGTAGTGAAAAAGATCACAAGGCTGGGATTTAGTGTTTTCTTGTCTGATCAGAAGATGTTATAATTGTTTTAGGTAGAAATTGAATGGACTCCCTGATCTGATGAGCGTAGACCGGAAGCGTCTGCCAGGCGTTCtcctcagggagagagagggaaagcagTCAGATTGGCCTCAGAAATACCACTCCCTCTGGAACTCTCTGCTGTTGCACTTTCTGGGCTACTTCATCGGTTACTGGATTCATGGTCAATtatttgagagagaaaaaaacactatTACTGTATCTGAAAATACTATTTATGCCCTAGATTCATGAAGCTGGTCTGACCCCAAGTTTACCATTCACGCTTGAATTCACCTTGGGCTGACTGATTGATAGATACATGAGCATAAACTGCAACATTAGTTATAGATGGCTACATTCTTGTGTTTTAGACAAACTAGTTGTGTGGATGCAACACACGCATAAGTAGAATCCTCACAGACCATATGGATCACTCTCATTACACATGAAACCAGTATTTTATTTTGAATGTGACCATATCTCATAACAGGAAAAGGGCAGCTACAGTACTTATTGGTGAGTTGAAGTGAAGTTTATTTGAGTTTGCATTGAGATTGTATGGGAAAGGGAATGGTCTATTCGACTTTTAATAGCTATCAGTATTGCACAGTGTGTAAATACAttatcttggggggggggcttgttGATTCAGAATGTCTTCATTCTCTTGGCAGAAGCTCTTGGGCTTTTATGAATTTGGTCTCACAGAATACCATTGTATGTCTCTTATaatagaaataaaataaaatacattgcaAGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271032 lncRNA downstream 19850 23379046 ~ 23386403 (-) False G237162
TU271030 lncRNA downstream 19850 23380119 ~ 23386403 (-) False G237162
TU271033 lncRNA downstream 19850 23380119 ~ 23386403 (-) True G237162
TU270973 lncRNA downstream 111930 23294120 ~ 23294323 (-) True G237114
TU270941 lncRNA downstream 115271 23290088 ~ 23290982 (-) True G237086
TU271246 lncRNA upstream 121665 23685154 ~ 23686114 (-) False G237366
TU271247 lncRNA upstream 121665 23685154 ~ 23686730 (-) True G237366
TU271290 lncRNA upstream 186065 23749554 ~ 23749821 (-) True G237396
TU271353 lncRNA upstream 303783 23867272 ~ 23867534 (-) True G237457
TU271358 lncRNA upstream 308181 23871670 ~ 23871871 (-) True G237462
XM_036972432.1 mRNA downstream 37362 23342123 ~ 23368891 (-) True LOC110503934
XM_036972420.1 mRNA downstream 209910 23172610 ~ 23196343 (-) True LOC110514368
XM_021593802.2 mRNA downstream 213471 23172610 ~ 23192782 (-) False LOC110514368
XM_021593788.2 mRNA downstream 241869 23144516 ~ 23164384 (-) True LOC110514348
LOC118944658 mRNA downstream 263287 23140834 ~ 23142966 (-) True LOC118944658
XM_021593895.2 mRNA upstream 146515 23710004 ~ 23713322 (-) True LOC110514548
XM_021593886.2 mRNA upstream 155900 23719389 ~ 23729898 (-) True LOC110514538
XM_021593909.2 mRNA upstream 204610 23768099 ~ 23770876 (-) True LOC110514588
XM_021593917.2 mRNA upstream 208022 23771511 ~ 23780158 (-) False LOC110514600
XM_021593956.2 mRNA upstream 268913 23832402 ~ 23840512 (-) True LOC100136261
TU270901 other downstream 217222 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 831264 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1650752 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1662842 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1907421 21498408 ~ 21498832 (-) True G234621
TU271267 other upstream 208035 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 617067 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 617067 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 957730 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 1206073 24769562 ~ 24769971 (-) False LOC110515154

Expression Profile