RNA id: XM_021593874.2


Basic Information

Item Value
RNA id XM_021593874.2
length 3579
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110514513
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23677362 ~ 23696446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTAGGCCCTGCCACCCATTGACTTGACAGAGAAGTGTCTGAAGAGGGCCAGTGTCACGAGCAGGTGTTTGGCCAGTCAGAGCAGGGAGCAGCATTTTGGTGTTCGCTCCCACAGTTGGACCAGCGAATTACATACCACTGAGGGACTGCAGTAAAGCAGTTAAACTTGGCAGAAATCTGGAGGTTCCCAACCCCCTTAAGATGTACGGCCTGTACTTGGAAGCGGTGAATGATTATATCAACGAGTCGTACGGAGAGGATGTATGGAGGCTGATAGAGGCCCGGGCAGAGATACCGCATCTCAAGTTTGTCCGCCATCAGATGTACAATGACAACCTGATCCTGCGGCTGGCCAAGGCAGCAGGCGAGGTCCTGGGGAAGACCCATGATGAGCTCATGTATGCCTTCGGGGTTTACATGGTGAAGAGGATCGGGAACTACGGCTACGAGAGGATTCTCAAGGTGTTGGGGCGTAATGTGCGTGACTTCATCAATGAGCTGGACAACCTGCACGAGTACTTTCGCTTCTCCTTCCCCAAGGTGCAGCCTCCCAGCTTCTGTGTGGAGGAGGAGTGTGAGACCAGCCTCACCCTGCACTACCGCAGCACCCGCAAGGGCTTCACCCAGTTTGTCAAAGGCCAGCTGTCTCAAGTGGGAAGGCAGTTCTACAACACAGACATTGAAGTTGAGATCCTGTCCAaagaggagactgaaaagatgacATATGTGATCTACAAGATGAACTTTGACAACGCTGCCTTCAAGCACCGCATGCCCCAGCAGAAGACGGCCCCGGGGTACGAGAAGCTACCCATGAAGAGGGGCATCTTTTTCGACATGTTTCCCTTTAGCGTGATCTTCCGCCGGGACATGACCATGTACCGCATCGGGGACGGTCTAAAGGAGGTTTTCTCCGACCTGCAGGGCAAGAAGGTCAACGAAGAGTTCACCCTGGTGCGGCCCATGCTGGAGTTCAGCTGGGACAACATCTACACCCACCTTAACAATGTGTTTGAGCTACTGTCCAAAGCTGTGGTGGAGAGCAAGCAGAAGGTGAATGTCCCTAAACTGAGCAAGGAAAAGGAAGACGAGGGAAAAGAGGAGAGCGAGAAAcccaagagagaggaagagagaagtaCAGAGAAGTCAAGGGTCCGCCCGTCGCCACAGTCAACCGACAGGAGAGATGTGAAGTCTGTGGAGGAGATGAAGGGGGACCAGGAGTTCAGCAGTGCTCTGACTCAGTACAACAGCTCAGCCAACTCAGGGGGAGAGGACATCGAGCTGCTTGCCTTCCAGACTGTCACCGGAAAGTGCAGTGAAACTATCTTTGAGGATATGAGGGAACCTCCCAAGAAGCCCCTCCACCTGAAGGGTCAAATGAAGTACGTCCCCCAGTGGGACTCGCTCATCTTCCTCAGTACACCCATTATAGAGACAGTGGAGGACATGATTAAAATGGGCGTCTATGTGAATGATCTGAACCTCCATGACTCCAGCCGAGAGCTCATCTTAGCCGGAACACAGCAGTCGGCTGAACTTCAGCTGGCTCTTGACCAGGAGCAGCAGAAGTACGCCCAGCTCCAGGAGATCATCAAGAAGCTTgacgaggagaagaagagaggagactcCCTCCTCTACGCCATGATCCCCAAAGCTGTGGCTGACCGGCTCAGGAAGGGTATCACGGCCCTGGAGACATGCCAGGTGTTCCCGGACGTGACCATCCTATTCAGTGACGTGGTGAAGTTCAACGAGATCTGCATCCACATCACGCCCATGCAGGTGGTGGACATGCTCAACGAGATCTACATCGTCTTCGACACGCTCAGCGAGAAGCACAACGTCTACAAGGTGGAGACCATCCGAGATGCCTACATGGTGGTGGCAGGCGTGCCCAATAAGACAACCTTCCATGCCCACCACATATGTGACATGGCCCTGGACATGCTGAGCTCCATCGACCACCTCAAAGACCCCTCCACTGGAGACAACATCCAGATCAGAGTCGGGATCCATTCAGGGATGGTGGTGGCTGGGGTGGTGGGGCTGAAGATGCCTCGCTACTGTCTGTTTGGAGACACCGTCAACACTGCCTCCCGCATGGAGAGCAACGGGGTGGGCATGCAGATCCACATAAGCCAGACCACCAAAGACCACTTGGAACATGAGCCCTACATaattgaggagaggggaaagatcTTTGTGAAGGGTAAAGGCTACATGAAGACATATTGGCTGAAGGGGAAGAAAGACCTGTCGTTTAAGACTCCAGCAGAGCTCCGCTACAGCAGTGAACAGAAGGACTCAGAGGACAGGAGCTCCAATGGGTCCACCTGCACCAACACCAAGCGCTCCACCTCCAACCTGAACATTCCCAACGAGGAGCAGGCAGAGGGCAAGCCCACCCCCACAGAGCTGCCTGCAGAGCCCTTACCTTCACTAGAGGGCGCCCCCGAAGACTCTACAGACCCCACCGAGCCACAGGAGAAGAAAGTCAAAAAGAACActaagaacaacaacaaaggggGCGCGGCCAAGCCCGAAGCTCCTCCGCAGCAGGTCAATGTGGTGCAGGAGAGTGCAGTGCCTCCTGCTGCTGCCCAGGAGACCCCCACAGCCCCCCCGGCCACCACCGCCCCAGTGCTCAACAACAAGAGGAACAGCTTCAGGCAGCATACCAAGCTGCCCGCCCACCTTCCCATGCGCAGCACTTCCTGTTGCCTACTGTGAGAGGAGAGGctaaaataatgtgactggcctGCATCTTATTGACAGTCCTGTGAAGACAAACCCTGAAACTGACCCTAACCTTGAACCTTAACCAATTAGAAAATTCAACATGGTTTCGCTGGTCAGTCACATCCCTTTTGTTTTTCCCTACTGTGAGATGGACCAGGCCAGAGTTCAAGACTTCTCATCTCAGATTATTGGCCAGCCTTCCTGTTCAATATATTGTATGACGCCCTGTTGTTTATCCTATGTTTTTCCTTAGGCAGGACCTGAGTCAGCAACATTCAGGGCAGCCCACACCTAATGTAATGTATTCATCCATTTATTCAAGGCGGACCACCCCACTTAAGTATTAATAGAGGAAACATTGATGcccttaaaataaaaaaaatgacattgctgatttttttttttatcttccaACAAATATATACCGATTCTCATGTCAAACAGTGGGCCTCTTTTGGTAATACAAGCACCTGGCTAATGTCACAGATTTGTGCATGTTGTTGAAAGGACATGTCAATAAATGTACAGTTCAGTTTATTACTGTCGGTGAAAACAAACATTACAGGATCACAATGGATTGGTATACAGAGTAAGATGAGATGTCAAGAGATGGTTGTATTTTATTTGCATAAACTAGTTCTGAGAAGTCTGACCCAAGTTACAGTTCTTATACTGTGTTTAATGATGGAATAATATTGACTTTAATATTAATTTATATAATAGCGCTTTTCCTAATGCTGTAAGTGCTTTActttttctgttttgtatttgtaaTTTGTTGCACGCTTACTGAATGTTAGCATATCTTTGTCCATAAAAACTGTACAGACAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270138 lncRNA upstream 366448 23310560 ~ 23310914 (+) True G236363
TU270099 lncRNA upstream 369678 23306855 ~ 23307684 (+) True G236325
TU270133 lncRNA upstream 379465 23297610 ~ 23297897 (+) True G236359
TU270130 lncRNA upstream 395095 23281412 ~ 23282267 (+) True G236356
TU270104 lncRNA upstream 442423 23234719 ~ 23234939 (+) True G236330
TU270346 lncRNA downstream 16929 23713375 ~ 23718688 (+) False LOC110514561
TU270347 lncRNA downstream 16929 23713375 ~ 23718688 (+) False LOC110514561
TU270349 lncRNA downstream 16929 23713375 ~ 23718688 (+) False LOC110514561
TU270348 lncRNA downstream 19899 23716345 ~ 23718688 (+) True LOC110514561
TU270414 lncRNA downstream 51983 23748429 ~ 23748663 (+) True G236615
XM_021593851.2 mRNA upstream 302922 23369004 ~ 23374440 (+) False LOC110514472
XM_021593845.2 mRNA upstream 302922 23369005 ~ 23374440 (+) False LOC110514472
XM_021593855.2 mRNA upstream 302922 23369006 ~ 23374440 (+) True LOC110514472
XM_021593838.2 mRNA upstream 335343 23306232 ~ 23342019 (+) False LOC110514448
XM_021593837.2 mRNA upstream 335343 23312356 ~ 23342019 (+) True LOC110514448
XM_021593880.2 mRNA downstream 6219 23702665 ~ 23708816 (+) True LOC110514526
XR_002472132.2 mRNA downstream 16925 23713371 ~ 23718761 (+) False LOC110514561
XR_002472136.2 mRNA downstream 16925 23713371 ~ 23718761 (+) False LOC110514561
XR_002472134.2 mRNA downstream 16926 23713372 ~ 23718761 (+) False LOC110514561
XR_002472135.2 mRNA downstream 16926 23713372 ~ 23718761 (+) False LOC110514561
TU270150 other upstream 326547 23350091 ~ 23350815 (+) True G236372
TU270145 other upstream 327984 23346880 ~ 23349378 (+) True G236370
TU270066 other upstream 478287 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 497063 23149152 ~ 23180299 (+) True G236271
TU269259 other upstream 996634 22673525 ~ 22680728 (+) False G235569
TU270428 other downstream 96351 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 96351 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 96351 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other downstream 96351 23792797 ~ 23795077 (+) True LOC110514613
TU270506 other downstream 212304 23908750 ~ 23929087 (+) True LOC110514733

Expression Profile