RNA id: TU270351


Basic Information

Item Value
RNA id TU270351
length 337
lncRNA type sense_over
GC content 0.36
exon number 3
gene id LOC110514513
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23677362 ~ 23696446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGACAGGCTGCACGAAAATTACGATTATGTTACGGGTGTGCAGTGCACATTTGGAGCGAAGTTGCTTTATCAATTGTGGAGAACATTCGATTGGTCTTGCCAGGAAGCTAATCCTAAAGACGGATGCAATACCATCATTGACCTTGGAACAGTGGATCTTGCAAGCGCTGACCATAACCTTCCCAGGCAACCACCACAGCAGGAATGCTGTGAAACATGTGAAGACAGACCAAAAATACTATCTACACCCACCTTAACAATGTGTTTGAGCTACTGTCCAAAGCTGTGGTGGAGAGCAAGCAGAAGGTGAATGTCCCTAAACTGAGCAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270138 lncRNA upstream 370605 23310560 ~ 23310914 (+) True G236363
TU270099 lncRNA upstream 373835 23306855 ~ 23307684 (+) True G236325
TU270133 lncRNA upstream 383622 23297610 ~ 23297897 (+) True G236359
TU270130 lncRNA upstream 399252 23281412 ~ 23282267 (+) True G236356
TU270104 lncRNA upstream 446580 23234719 ~ 23234939 (+) True G236330
TU270346 lncRNA downstream 28131 23713375 ~ 23718688 (+) False LOC110514561
TU270347 lncRNA downstream 28131 23713375 ~ 23718688 (+) False LOC110514561
TU270349 lncRNA downstream 28131 23713375 ~ 23718688 (+) False LOC110514561
TU270348 lncRNA downstream 31101 23716345 ~ 23718688 (+) True LOC110514561
TU270414 lncRNA downstream 63185 23748429 ~ 23748663 (+) True G236615
XM_021593851.2 mRNA upstream 307079 23369004 ~ 23374440 (+) False LOC110514472
XM_021593845.2 mRNA upstream 307079 23369005 ~ 23374440 (+) False LOC110514472
XM_021593855.2 mRNA upstream 307079 23369006 ~ 23374440 (+) True LOC110514472
XM_021593838.2 mRNA upstream 339500 23306232 ~ 23342019 (+) False LOC110514448
XM_021593837.2 mRNA upstream 339500 23312356 ~ 23342019 (+) True LOC110514448
XM_021593880.2 mRNA downstream 17421 23702665 ~ 23708816 (+) True LOC110514526
XR_002472132.2 mRNA downstream 28127 23713371 ~ 23718761 (+) False LOC110514561
XR_002472136.2 mRNA downstream 28127 23713371 ~ 23718761 (+) False LOC110514561
XR_002472134.2 mRNA downstream 28128 23713372 ~ 23718761 (+) False LOC110514561
XR_002472135.2 mRNA downstream 28128 23713372 ~ 23718761 (+) False LOC110514561
TU270150 other upstream 330704 23350091 ~ 23350815 (+) True G236372
TU270145 other upstream 332141 23346880 ~ 23349378 (+) True G236370
TU270066 other upstream 482444 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 501220 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 982685 22672736 ~ 22698834 (+) True G235571
TU270428 other downstream 107553 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 107553 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 107553 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other downstream 107553 23792797 ~ 23795077 (+) True LOC110514613
TU270506 other downstream 223506 23908750 ~ 23929087 (+) True LOC110514733

Expression Profile