RNA id: XR_002472134.2


Basic Information

Item Value
RNA id XR_002472134.2
length 1948
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110514561
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23713371 ~ 23718761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGATTACAAACGGTTTTGAAGATGTTTGGAATAGCTAGCTAGCGATTCGCAAATAAGGACCTTACTAACAAATATATTTAGCTAACCCTATTAATCTAAATGTCGTTTAAAAGAGAGGGCAATGATCAGAGTCAATCGAATATCCTCAAGGCGAGCCATTTTATTAGTTGTTACTTACACAGAAATCAATTTGTactttagcttgctagctacatgCGAAACGGGCACGTTTGTCATTTTAACAAGCTAGTTAgttaacgtagctagctaacgttaattgtTTATTTCCCAGAAACGGCGTGTTGCAGAACTCCTGTCCAATTTCATTCCAGAGGATGAGGTAGCCTTGATGAAAAATGAAAGGTGAAGTACCTGCTGTGCCGAAAATCACCCCCTGATAGAACACCTAAacatgatattgtttaggaccttgagcgtggctgaggtgcactcatgaccagctcggaaaccagattgcatagtgaagaagGAAGCTATATCAAAACCATCCGTGAAGGCTGAATGTGCCTACACTAATCCTTTCTGTGCCAGGGATGAAGTGGTTTTATGGAAAGAAAACTCAACTGAAAAATGAGATATCTTAACGAAACCATGAAAACCATGTTCAAGCTGAAGATAGCCGACAGGAACCCTCTAGTTCTGCCCCCCTGTTGACACAGACATGTAAACTCACCCACCACACCTTACTGAAGACTGTAATATATTTATTTGGCACAAAAAGACCAGTGACATCAGCCCCTCCAGCACAAGACTATCATCACCACATCAAACGTCAGTGGAGACAATGATAAGACATCATGTCATTACCCAGTTCCAACAGTAATACACCAGTCAATCAGGGATCGTGTCTAATTGGGAGAAATAAGGAAGTGTGTAAGAAGGAGTCAGCCAACGGCGACACAGGAGTCGGAACCTATATGACAGCTCAAAGGAGGAGCATTACCTTAAATTGAAAAGTGCGGGACGGCTGCAGGACAGGAGTGACCCGTGGGTAAAGGATGAGAATGTGGAATTTGATTCAGATGAAGAGGAACCCtcatccctcccatcctcccactgACTCAGAGGGCTGACCAGATGAGCAGCAGGGACCAGACCTCAACACCAGCACCTTCCCACAATCCCTAGCCCTTTCCTCAAACCCTGCTGCTGACACAAAGGTCCCATTTGGACATACATCTGTTGACTCAACAATTATGAATGGCACTCTGTTGCAGTAATGACAACACTATAAGAGCAGCACTAGAACATCTTGAACTGCCTCCATGCTTCCTTTGTTTACTCTTATCTCAGGGTAGACACATTGGTGCTTGAGACAATGCTTTGACTGTTGTCACCCTGCGAGGGATGGGAAGGGGGACGATTCTCAGCACCCTTTGTGTTATTCCGTTCACCCATTTTATTTAGGTCCAACACCTCCCCTGTTAAGGCTAAGCTGTGATCTTACCATAAATCATCAGCAGATAGGACAATATTACTGCTAATCTTGGTAGTGTAACCACCGGTTAACATTCTTCAGAAGGTTCTCATTTGTGGCTCACCCCTAGACCACTCTATATATTGGATAACCCCCCTCCCTACAGAAAGCCAGCGTGCGGACTTAACGTGGGTTAGTTTAAAACGATGACGTTAAAATGTGGCAATCTGAGTAACTGATTATTATTTGTGAGCTCATTGCGTGACTGCCACAAGGCGTTTGGAATGTTTGTTGACTGCATCGACACAGGAGCTCAACTGTCTTTATGTGTCATCAAGGCTGATGATGTTATGGAGTTAAATTGTCAATGCAATAAGTAATGTTGACTCTATCATGTTACTTGTACTTTCAGATGACTAAACAAAGCAATTGTCCTCCACTGCTAACAATGTCTGTTTGAATAACCCAGATACAAGGGAGTAAAATAAAGCACCACTTAACTTAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270351 lncRNA upstream 28128 23681519 ~ 23685244 (+) True LOC110514513
TU270138 lncRNA upstream 402458 23310560 ~ 23310914 (+) True G236363
TU270099 lncRNA upstream 405688 23306855 ~ 23307684 (+) True G236325
TU270133 lncRNA upstream 415475 23297610 ~ 23297897 (+) True G236359
TU270130 lncRNA upstream 431105 23281412 ~ 23282267 (+) True G236356
TU270414 lncRNA downstream 29668 23748429 ~ 23748663 (+) True G236615
TU270415 lncRNA downstream 30509 23749270 ~ 23749506 (+) True G236616
TU270421 lncRNA downstream 39812 23758573 ~ 23759384 (+) True G236622
TU270422 lncRNA downstream 43218 23761979 ~ 23762351 (+) True G236623
TU270424 lncRNA downstream 46791 23765552 ~ 23765841 (+) True G236625
XM_021593880.2 mRNA upstream 4556 23702665 ~ 23708816 (+) True LOC110514526
XM_021593874.2 mRNA upstream 16926 23677362 ~ 23696446 (+) False LOC110514513
XM_021593851.2 mRNA upstream 338932 23369004 ~ 23374440 (+) False LOC110514472
XM_021593930.2 mRNA downstream 61639 23780400 ~ 23795199 (+) False LOC110514613
XM_036972569.1 mRNA downstream 61639 23780400 ~ 23795199 (+) False LOC110514613
XM_036972575.1 mRNA downstream 61640 23780401 ~ 23795199 (+) False LOC110514613
XM_036972576.1 mRNA downstream 61640 23780401 ~ 23795199 (+) False LOC110514613
XM_036972561.1 mRNA downstream 61641 23780402 ~ 23795199 (+) False LOC110514613
TU270150 other upstream 362557 23350091 ~ 23350815 (+) True G236372
TU270145 other upstream 363994 23346880 ~ 23349378 (+) True G236370
TU270066 other upstream 514297 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 533073 23149152 ~ 23180299 (+) True G236271
TU269259 other upstream 1032644 22673525 ~ 22680728 (+) False G235569
TU270428 other downstream 74036 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 74036 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 74036 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other downstream 74036 23792797 ~ 23795077 (+) True LOC110514613
TU270506 other downstream 189989 23908750 ~ 23929087 (+) True LOC110514733

Expression Profile