RNA id: TU270348


Basic Information

Item Value
RNA id TU270348
length 1713
lncRNA type sense_over
GC content 0.44
exon number 5
gene id LOC110514561
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23713371 ~ 23718761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAATCAAATGAAACGCAACCTACCGTGAtcagaaatctcaactagcaagcaagtcTGGCAGGGGGAGATTTTCTGCACAACACCGTTATCATTGCTATCAACTGGAATGAATCCTTACCCAGATCTTACTGTTGTTTTCATTTGGCAGACTAAGCACTTCTCATGAGCATCTGTATTTTTCCTAATTCCCGTTCAAGATACACCTGCCTTGTGTGTTCATACCGCCTTGTTTTTGATACAGTTGACAGGCTGACATTACACAGAAAGgggaaaatacattttctgtGTAATGTCAGCATATGAATTATACGTTATTTTCCCAAGCAGGAAGCTATATCAAAACCATCCGTGAAGGCTGAATGTGCCTACACTAATCCTTTCTGTGCCAGGGATGAAGTGGTTTTATGGAAAGAAAACTCAACTGAAAAATGAGATATCTTAACGAAACCATGAAAACCATGTTCAAGCTGAAGATAGCCGACAGGAACCCTCTAGTTCTGCCCCCCTGTTGACACAGACATGTAAACTCACCCACCACACCTTACTGAAGACTGTAATATATTTATTTGGCACAAAAAGACCAGTGACATCAGCCCCTCCAGCACAAGACTATCATCACCACATCAAACGTCAGTGGAGACAATGATAAGACATCATGTCATTACCCAGTTCCAACAGTAATACACCAGTCAATCAGGGATCGTGTCTAATTGGGAGAAATAAGGAAGTGTGTAAGAAGGAGTCAGCCAACGGCGACACAGGAGTCGGAACCTATATGACAGCTCAAAGGAGGAGCATTACCTTAAATTGAAAAGTGCGGGACGGCTGCAGGACAGGAGTGACCCGTGGGTAAAGGATGAGAATGTGGAATTTGATTCAGATGAAGAGGAACCCtcatccctcccatcctcccactgACTCAGAGGGCTGACCAGATGAGCAGCAGGGACCAGACCTCAACACCAGCACCTTCCCACAATCCCTAGCCCTTTCCTCAAACCCTGCTGCTGACACAAAGGTCCCATTTGGACATACATCTGTTGACTCAACAATTATGAATGGCACTCTGTTGCAGTAATGACAACACTATAAGAGCAGCACTAGAACATCTTGAACTGCCTCCATGCTTCCTTTGTTTACTCTTATCTCAGGGTAGACACATTGGTGCTTGAGACAATGCTTTGACTGTTGTCACCCTGCGAGGGATGGGAAGGGGGACGATTCTCAGCACCCTTTGTGTTATTCCGTTCACCCATTTTATTTAGGTCCAACACCTCCCCTGTTAAGGCTAAGCTGTGATCTTACCATAAATCATCAGCAGATAGGACAATATTACTGCTAATCTTGGTAGTGTAACCACCGGTTAACATTCTTCAGAAGGTTCTCATTTGTGGCTCACCCCTAGACCACTCTATATATTGGATAACCCCCCTCCCTACAGAAAGCCAGCGTGCGGACTTAACGTGGGTTAGTTTAAAACGATGACGTTAAAATGTGGCAATCTGAGTAACTGATTATTATTTGTGAGCTCATTGCGTGACTGCCACAAGGCGTTTGGAATGTTTGTTGACTGCATCGACACAGGAGCTCAACTGTCTTTATGTGTCATCAAGGCTGATGATGTTATGGAGTTAAATTGTCAATGCAATAAGTAATGTTGACTCTATCATGTTACTTGTACTTTCAGATGACTAAACAAAGCAATTGTCC

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270351 lncRNA upstream 31101 23681519 ~ 23685244 (+) True LOC110514513
TU270138 lncRNA upstream 405431 23310560 ~ 23310914 (+) True G236363
TU270099 lncRNA upstream 408661 23306855 ~ 23307684 (+) True G236325
TU270133 lncRNA upstream 418448 23297610 ~ 23297897 (+) True G236359
TU270130 lncRNA upstream 434078 23281412 ~ 23282267 (+) True G236356
TU270414 lncRNA downstream 29741 23748429 ~ 23748663 (+) True G236615
TU270415 lncRNA downstream 30582 23749270 ~ 23749506 (+) True G236616
TU270421 lncRNA downstream 39885 23758573 ~ 23759384 (+) True G236622
TU270422 lncRNA downstream 43291 23761979 ~ 23762351 (+) True G236623
TU270424 lncRNA downstream 46864 23765552 ~ 23765841 (+) True G236625
XM_021593880.2 mRNA upstream 7529 23702665 ~ 23708816 (+) True LOC110514526
XM_021593874.2 mRNA upstream 19899 23677362 ~ 23696446 (+) False LOC110514513
XM_021593851.2 mRNA upstream 341905 23369004 ~ 23374440 (+) False LOC110514472
XM_021593930.2 mRNA downstream 61712 23780400 ~ 23795199 (+) False LOC110514613
XM_036972569.1 mRNA downstream 61712 23780400 ~ 23795199 (+) False LOC110514613
XM_036972575.1 mRNA downstream 61713 23780401 ~ 23795199 (+) False LOC110514613
XM_036972576.1 mRNA downstream 61713 23780401 ~ 23795199 (+) False LOC110514613
XM_036972561.1 mRNA downstream 61714 23780402 ~ 23795199 (+) False LOC110514613
TU270150 other upstream 365530 23350091 ~ 23350815 (+) True G236372
TU270145 other upstream 366967 23346880 ~ 23349378 (+) True G236370
TU270066 other upstream 517270 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 536046 23149152 ~ 23180299 (+) True G236271
TU269259 other upstream 1035617 22673525 ~ 22680728 (+) False G235569
TU270428 other downstream 74109 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 74109 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 74109 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other downstream 74109 23792797 ~ 23795077 (+) True LOC110514613
TU270506 other downstream 190062 23908750 ~ 23929087 (+) True LOC110514733

Expression Profile