RNA id: XM_021593886.2


Basic Information

Item Value
RNA id XM_021593886.2
length 1641
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110514538
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23719389 ~ 23729898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggaggggagaggggtatAGAAAAAAGAAAACCGGTGGGAGGGGATAGAAAAAAGAGAACCACCATTCTCAGGTTCCAACAGCAGGCTTTGCCTTGTAGAGGGCTCCAGCACTGCAACTCTGTGAAGACAGTGCCCTGCTCTACCCCaggggtgtgtggtgtgtttgtgaccCTAGCTAGGAGCCCAGCCAGCCTGCAGACATGTCGAAAAGCGACCCCCGGGACATCGACGAGGATGCCATCCTCAAAGGGATGAGCCCTGAGGAGATAGAGGCGCTAGAGTGTGAGCTGCTGGAGATGGACCCCGAGAATGCCATCCTGCCAGCCGGGTACCGCCAGCGTGACCAGACCAAGAAGAGCCCAACGGGGGCGTTTGACCGTGACGCCCTGCTGGATCACTTAGAGAAAACAGCTCTGGAGCACGAGGACAGAGACGACCTGGTGCCCTTTACTGGCGAGAAGAAAGGGAGAGCATTTGTTCCTAAGGAGGGCCATGGAAAGATCCCCGACCATGAGCAGATCACCCTGGAGCCTGAGCTGGAGGAGGCTCTGAAGAATGCCACAGACGCTGAGATGTGTGACATCGCAGCTATTCTGGGAATGTACACACTGATGAGCAACAAGCAGTACTATGACGCCTTGGGCACCACTGGTACCATCGCCAACACAGAGGGCATCAACAGTGTAGTAAAACCAGATGCATTCAAGATCTTCCCAGACGAGCCCCCCAACCCCACAAACGTGGAGGAAACCCTTCAGCTGATCCAGAAAAACGACAGCAGCCTGTTTGATGTCAACCTCAACAACATCAAGgaCGTTCCCATCCCAACACTGAAAGAGATCTTTGAGGCGATGAAGGGCAACACCCACGTGGAGTATCTGAGCATTGCCGCTACCCGTAGCAACGACCCCGTGGCCTATGCTGTCGCTGAGATGCTCCAGGAGAACACCACTCTGCAGAGTCTTAACATCGAGTCCAACTTCATCACCTGCGAGGGCATGAATGCCATCGTCAAGGCCTTGGCCAACAACACCACACTGACCGAGATCAAGATCGACAACCAGAGACAGAAACTGGGGGACTCCTGTGAGATGGAGATTGCCACCATGTTGGAGAACAACTCCAGCATCGTAAAGATCGGCTACCACTTCACCCAGCAGGGGCCTCGGGCTAGAGCAGCCATCGCCATCACCAGGAACAACGACATAATTCGTCAACAGAGAGTAAGATGAGACGAGAGTGGAGCAACAAGTTAGGCTCACGTCTTGAGAGCACAATCAACTCAGCCCCTTGGACCTAACAACTCTAAAAACGGCCATTGACAGCTTTGCGCTAGCTTTGTCAATGGGGCGCAACTAGCCTTTACAACCCCTCTGTGCCTCGTCACAAGTCCGGGTGTTCATTTCGATTTCTGTGTCCAAGCATTTTGTTTACCACAGCTTTTTGTAGACCATTGAATTCATCATAAAAGAATACATAGGTCACATCGTTGTAAAGTGTCATTTATGCTTCTAGAGTACGCCATGATAATACTCAGAAAATGGAGGTGATAAAACTCCTACATGGTAGTGGTGCTATATCTAGGAAAATAATATCTGTAAATACTTTTAATAAACGTTGAAATAATTCATTGTTTTAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271247 lncRNA downstream 32659 23685154 ~ 23686730 (-) True G237366
TU271246 lncRNA downstream 33275 23685154 ~ 23686114 (-) False G237366
TU271032 lncRNA downstream 332986 23379046 ~ 23386403 (-) False G237162
TU271290 lncRNA upstream 19656 23749554 ~ 23749821 (-) True G237396
TU271353 lncRNA upstream 137374 23867272 ~ 23867534 (-) True G237457
TU271358 lncRNA upstream 141772 23871670 ~ 23871871 (-) True G237462
TU271359 lncRNA upstream 142363 23872261 ~ 23872770 (-) True G237463
TU271360 lncRNA upstream 143418 23873316 ~ 23873537 (-) True G237464
XM_021593895.2 mRNA downstream 6067 23710004 ~ 23713322 (-) True LOC110514548
XM_036972497.1 mRNA downstream 155898 23406253 ~ 23563491 (-) True LOC110514498
XM_036972455.1 mRNA downstream 155900 23406253 ~ 23563489 (-) False LOC110514498
XM_021593909.2 mRNA upstream 38201 23768099 ~ 23770876 (-) True LOC110514588
XM_021593917.2 mRNA upstream 41613 23771511 ~ 23780158 (-) False LOC110514600
XM_021593956.2 mRNA upstream 102504 23832402 ~ 23840512 (-) True LOC100136261
XM_036972601.1 mRNA upstream 111443 23841341 ~ 23848800 (-) False LOC110514697
XM_021593963.2 mRNA upstream 111443 23841341 ~ 23849924 (-) True LOC110514697
TU270901 other downstream 530358 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1144400 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1963888 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1975978 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 2220557 21498408 ~ 21498832 (-) True G234621
TU271267 other upstream 41626 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 450658 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 450658 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 791321 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 1039664 24769562 ~ 24769971 (-) False LOC110515154

Expression Profile