RNA id: XM_021593917.2


Basic Information

Item Value
RNA id XM_021593917.2
length 3191
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110514600
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23771511 ~ 23780158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTCTTTTTTTGTCGACGAGTCTTGTTCACAAGAGGCAGGTTAGATTTGTGGAAGCTAGAGGAGCACCCCTGCATACATTCTAACCTGCGTTTTCAAGCAAATCGGACTTCCAGTCCATTATAGCTGCGTAATGTCGTCCGAAAATCTATCAGATACTCAAATGGAATATGAGGATGAAAAACAGGACTCTCAGGAAAAGAATGCCAACCTTGTGAAGGGCGAAGAGGTCAAGCTGAAGGCCAAGTACCCCGGCCTGGGCCAGAAGCCTGGAGGCTCCGACTTCCTCATGAAGAGGCTACAGAAAGGGCAAAAATACTTTGACTCAGGTGACTACAACATGGCCAAGGCCAAGATGAAGAACAAACAGCTGCCCGTGGCGGGCCCTGACAAGAACCTCGTCACAGGGGACCACATTCCCACGCCACAGGACCTGCCCCAGAGGAGGTCCTCCTTGGTGACCAGCAAACTAGCAGGCTAGCCTAGCCTCCACCCATCCGCCAGGCCCCCAGCTAACGTTCCTCACCTGTCCCCCAACAATGCCCACCCCTAGTCATCTCCAGGCTCTACTTGGCTTTAACATATCGGGGAGAGCTGTGAAAGTCAGTACATATTGCTTGTATGTGGGTAGGGTGGGGAGGTGAGCTGGGACCTTTTCTACCATCTCTCCACACAGCTCTGCTCTCTGCGCACTCTGCTCTACCGCCTCCCTTATGTCTTGGTTTGGTGTTCAGAGGTACATAAAGTAGATGTGCCATCAGGGAGGCTGAGTTTAATGCACTTTGTATTATGTACAGTTTGTTTTTGCATCCCGAACAACACCAAAATATATTGTTGACGAGGGAGTTAGGAACCATGATCGCTCCACAATTTTCGATGTTGTGTTCTCGTCAAAGCTGGGGGTAGATGTTTGCATATTTTGCTTGCACACCAAATCTGGGAGGGAAGGGAACCATGGTGAAGTATCCAAAGGAATGGAGTGGTAATCAGAGGGAAATGTGGAAACTGATTTGAGGTTTCCTTTATCTCATGTTTTGTCAAACAAAAATCCAAGGTCATCCACGCTGACCTGAACGAACGGATatgaaactgcacattttctgCTCATGTTGCTTTAATTCTTGACTCCCTGTTGCTCTTCTTTTTCTAAATATGCTGCATGATTGTAacatgtaacaaaatgtgcaaatctGGAGGGGTTAGACGACTCATAGGAAGTAGCAAGCAACCAAATGGAGCCATGGAATGTCCATGGTCACTCTCcacaccttccttccttccctctcaatGTCCTGACAATCCACACACTGTCTGTAGGCTGCCCATGGCGAAAGCAATGGCAAAGCAAACTAAATACCCATTTATCATTTTAAGGCTGGGAAAATAAGTTGTATAATACTCAAGTTAAATCTCAGTTCTGTGGCTATTACATCACATCAAAAAGCCTAAATGATTAGGGGATCAATTCAGTGTATATTTCTGTATTGTGTTGAGAAATTTGACATTTGGTATGATTTGTGTCTTTAATGGGTTGTTTGTACATTGTCACGCATTAGCCATTTACTACAATCTGGCTCTTCACTGTTAATGGCAGCTCCTGTTGAGAAACTTCCAGTAACAGAAGATTACTGCCTAGTTCCCAATTACATTAGTTGCTAAACCTCTCCTCGGTCTCTCCTTCAAATTCAACGTAGCAGGAGCCTCACAGCGTACTGCTAAAGCATATAGCCTCACGTATTTACAttctaaataaaaaaatctgcgATGTCAGTAATGGGGTAAACAGTCAGCCATCTGATAAACAGGCAGCCTTACTGGCCCCTGGCTCACACACACCTAACTGGAACACACAGCGTGCTTTAGAGATATGCTCACTTGACACATGGCAAAGGGAAGGGATTTTATGAcatgaggagagggggaaaattgtgtgtgtgtatttagttGACCCTGCTCACACCTGTTGGGATGGCTCAACTTGCAAAATAATTATGGTCAGGGGTGTGTTAGATAAATCATACAAAAGTAAAGGCTAGTCGTCCTATCTCACACTCCACACAAATGATAAAATACACACTTGATCACTCCCGTCTTGGCAGCTTTTGAATATTAGACACGGACCTGTGTCAAATTGCAGGGAAGAAGATAGTGTGTTTGTCTGGGTTAGTATGAATGTGCTGCTGTTCTCTGTCCCAGCGGGTGTAAATAGACTTGGGGGTTGAGGATATTTTTTCTTTCTGTTGATTTCACTACTTGTAGTGCTCTGATTCAATGTTTCCTTTCTCCTGTCGGTGAATACACTacttctgcttttcttttcttttttacgACAGAGACCTTCATCTGTATAATATGAATGTGTAAATGCTGCTGATTTCAGTCGATGACAAATCTTAAACTGAGATATTACCCTATAAAGAAAGCCTGTCCCAGGATTCAAACAATTGGACCCACTCCTACCATGAATAATGTCTGCCAATTGGAGACTGACTAACCCCTCCAGGGTTGGGGGTATAATTCCATTTCAATTAGGATATGAATTGAAATTCTACCCATGCCCAATGCAATCCATTTTGGGAACTGGCCAGCAGGAGTTGAAATTTAATTGACCCCAACTTGTTACTTGAATTTGAACAGAAAGACCGTTCAGAATCCTAAATAATTGTAGCTTGCCATTGCAGGCTTAAAAAGTGTCCTAATATAATTGGATATGCTGCTGAAATTAAGGTTGTTGAAACAACAGAGGAATTCTTGATTGCTATGTTTTTGTGCACTGTCTGGCTTTGTATGGAGCAATGCAATGAGGGATATAGCAGGGTATGTTAAAATACCATGTCTCCTGTTCAACCATAAGTATGTGCCAGAATGTAAACAAATGAAAATGACTGTGCTGCTTACTGAAACTGTTTTTGGTTTTGTGTACAGTAAATATGTTTTAGTGTTCTCTTACATCACTACATAACTACAACAAAAGTTTATCCTGGCCCAAGATAACTGCAGGGATATCTGGAGCACCCTTGCTCCCAATAACTGGGGGTTTACTTAAGGATATGTGTATTGTGGCGCTGGAGACAAAACAAaagattgattttaagaaattagAAAGTACATGAGTACTAATAATGTTTGTTGTGTGGAAGTAGTGGAGCAAATTTGTCAGTATTTGAAATAAACTTTTACATGAATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271290 lncRNA downstream 21690 23749554 ~ 23749821 (-) True G237396
TU271247 lncRNA downstream 84781 23685154 ~ 23686730 (-) True G237366
TU271246 lncRNA downstream 85397 23685154 ~ 23686114 (-) False G237366
TU271030 lncRNA downstream 385108 23380119 ~ 23386403 (-) False G237162
TU271353 lncRNA upstream 87114 23867272 ~ 23867534 (-) True G237457
TU271358 lncRNA upstream 91512 23871670 ~ 23871871 (-) True G237462
TU271359 lncRNA upstream 92103 23872261 ~ 23872770 (-) True G237463
TU271360 lncRNA upstream 93158 23873316 ~ 23873537 (-) True G237464
TU271366 lncRNA upstream 101489 23881647 ~ 23884871 (-) True G237470
XM_021593909.2 mRNA downstream 635 23768099 ~ 23770876 (-) True LOC110514588
XM_021593886.2 mRNA downstream 41613 23719389 ~ 23729898 (-) True LOC110514538
XM_021593895.2 mRNA downstream 58189 23710004 ~ 23713322 (-) True LOC110514548
XM_036972497.1 mRNA downstream 208020 23406253 ~ 23563491 (-) True LOC110514498
XM_036972471.1 mRNA downstream 208022 23406253 ~ 23563489 (-) False LOC110514498
XM_021593956.2 mRNA upstream 52244 23832402 ~ 23840512 (-) True LOC100136261
XM_036972601.1 mRNA upstream 61183 23841341 ~ 23848800 (-) False LOC110514697
XM_021593963.2 mRNA upstream 61183 23841341 ~ 23849924 (-) True LOC110514697
XM_021594003.2 mRNA upstream 195716 23975874 ~ 23980300 (-) True LOC110514815
XR_005041888.1 mRNA upstream 287772 24067930 ~ 24078853 (-) True LOC118947709
TU270901 other downstream 582480 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1196522 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 2016010 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 2028100 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 2272679 21498408 ~ 21498832 (-) True G234621
TU271572 other upstream 400398 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 400398 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 741061 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 989404 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 989546 24769704 ~ 24770323 (-) True LOC110515154

Expression Profile