RNA id: XM_036972576.1


Basic Information

Item Value
RNA id XM_036972576.1
length 1826
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110514613
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23780400 ~ 23795199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCATTTAAAACGGATGTTTACCTCGGCCAGGACATATCACTCACTACCTTTGATAAATCTATTCACGCAATGTATGTTGTGGTGGCAAGAAAATGTACGTTATCTAAGGCTGCCCTCTGATTGGCTACTTTAGCTGTCCTTTTTGGCGGGTAACTGTGCGTCTGGCGCGAGTTTGACCCAACAGCCAACAGTTTCTTAGTAAATTCggtctggctagctagctaacttgtttTTGGTAGTTATTACCAAAAAAACAGGTTGTGTGATTGCGCTCTATCTAGATTTGACAACTTGTTATCAACTAGTATTACTACCATGGCATGTGAACAACGTTTGCGGGCTGCTCAGGGCACCCAGTTGCTGCCAAATGTAGTTTCAACAGAGCAGCAGTCCTTGATTGTTGTGAAGAAACTGCTGGCAATTGCAGTCTCCAGCATCACTTATCTCAGGGGTCTTTTCCCAGAAAAAGCTTATGGGAGAAAATTTGTTGAAGAGCAGAAAGTTATGATCCTCAGGGAGGAACGCACCTGCCCTGGTGCCAGTCAAATTGTACAGTGGATGCAGGGATGCTTTGATGCCCTTCAGAGAAAATACTTGCGGACGGTcgttatgtctATATACACAGACCCAGATAATCCAAAGCAAAAACAGCAAGAATCTGGGAAAGATGGCTTGCAGCAACACAAAAAAGTCCAGCATCCTCCTGtcACTCCCCAGGACTACCAACCCCCAGGCTTCATGGAGGGGGACAGCGATAGCATGCAGTTTGAGAAGGAGCCTGTCAACCTGACCATGGGCGAGGTGGTCACTCCCTTCCACACCCTGAAGGTGGATgtgaccacagagagagaaaggctggAGCAGGTCGATGACGAGCAGCCGATCTGCATGAGGGACAAGTGGGAGCTGAAGATGGAGGAAGGGACAGTGACCAAGATCAGCAGTCAGCAGACTCGCATGATAAAAGTAATGGAAAATCCGGACAACGACCTTTACTTGGACAATTCCGAGGTCCAGGTGAACTGCCAGGAGAAGATGGAGaTGGACACTTTGGTAAAGAGGACATCTGACCTGGAAGTGGCCATTAAGAGGACCAGGAGCGGACGCGTCACCAGGTCCACCCTGgagagAAAGGCTGAGACTGAGGTGCACAGCGTCAGCAAGAAGAAGCCCTCTCCCATCGAAGACAAAATGCAGATATCGCAGTTCGAGTTCCCCTGCAGTCAGGATGTCCAGGCCTCTGTGTCGAAGAAACGCAAGTTCAGCGAACCCAAAGAACGctactgacctctgacctttccaCTTTACCTATAAGATACCTTTCAAGACAAGAACCGATTTTCTAATTTGCATGGGCAAAATCTCTAGTCTTTTTTAGTTGTTTTAAAGGAAAGGTGTAGTGCCCACCGCCAACACCACCATAGTACTGCTGCATTCTGTTGTTACAATGGAAAGGATAAAGGAAATGGTTATTTCTAGTCCACCTTGTTTATGTTTATACTTTTTCTTTTTCATTGTTGAGTTTCATGGTAGTGTGTGATATGGAGACTGGGGAAAATGTATTTTCTACAATTGTATATTGGTGTCTGTGAAGTGCGAAACTCacagttttatttatttcaaaggATGGCATTTTTATTGTGACaatactgttttttttatttagtttGTTTTATGATTACCATGAACTTTACACTGTGCaaaattgtgtttatattttataTTGTTATATAATGTATCAATACAGTACCCTCCAGTTGTAAGTTATTTGATTAAATGTATGTTTCTAATAAATTAAAGTGCCTTTTCTCAGTTTTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270342 lncRNA upstream 10239 23765855 ~ 23770162 (+) True G236549
TU270424 lncRNA upstream 14560 23765552 ~ 23765841 (+) True G236625
TU270422 lncRNA upstream 18050 23761979 ~ 23762351 (+) True G236623
TU270421 lncRNA upstream 21017 23758573 ~ 23759384 (+) True G236622
TU270415 lncRNA upstream 30895 23749270 ~ 23749506 (+) True G236616
TU270453 lncRNA downstream 37204 23832403 ~ 23840472 (+) False G236647
TU270459 lncRNA downstream 41346 23836545 ~ 23839623 (+) False G236647
TU270455 lncRNA downstream 46168 23841367 ~ 23850161 (+) False G236647
TU270456 lncRNA downstream 46168 23841367 ~ 23844466 (+) False G236647
TU270457 lncRNA downstream 46168 23841367 ~ 23842769 (+) True G236647
XR_002472132.2 mRNA upstream 61640 23713371 ~ 23718761 (+) False LOC110514561
XR_002472136.2 mRNA upstream 61640 23713371 ~ 23718761 (+) False LOC110514561
XR_002472134.2 mRNA upstream 61640 23713372 ~ 23718761 (+) False LOC110514561
XR_002472135.2 mRNA upstream 61640 23713372 ~ 23718761 (+) False LOC110514561
XM_021593880.2 mRNA upstream 71585 23702665 ~ 23708816 (+) True LOC110514526
XM_021593955.2 mRNA downstream 25223 23820422 ~ 23832249 (+) True LOC110514668
XM_021593968.2 mRNA downstream 72068 23867267 ~ 23886989 (+) False LOC110514708
XM_021593971.2 mRNA downstream 85714 23880913 ~ 23886989 (+) False LOC110514708
XM_036972657.1 mRNA downstream 85714 23880913 ~ 23886989 (+) True LOC110514708
XM_021593980.2 mRNA downstream 96686 23891885 ~ 23907345 (+) False LOC110514755
TU270150 other upstream 429586 23350091 ~ 23350815 (+) True G236372
TU270145 other upstream 431023 23346880 ~ 23349378 (+) True G236370
TU270066 other upstream 581326 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 600102 23149152 ~ 23180299 (+) True G236271
TU269259 other upstream 1099673 22673525 ~ 22680728 (+) False G235569
TU270506 other downstream 113551 23908750 ~ 23929087 (+) True LOC110514733
TU270587 other downstream 260120 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 954206 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 970467 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 980080 24775279 ~ 24775945 (+) True G238050

Expression Profile