RNA id: XM_021593955.2


Basic Information

Item Value
RNA id XM_021593955.2
length 5991
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110514668
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23820422 ~ 23832249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaAAGAGTTGGTGGGGCTGAAATCGATGAAGTAGCAGgctgagggaagaggaggaggaaaatctCACGAGATAATGAAAGAAAAAGAGGAGAGCTGCTAGGTAGAGAAGAGCAAGGCTACATATGGACGTTTGACTTTAAAAAAGACCAAAAGGACAGGGAAAGGACGTATACCTAACCGCCAATTGTTTGGCCTCTGTTTTATTGTATGTAGCATCCCTCGGTGCATCTGACCAATTGTGTGAATCTGCGCGGACAGGCTGGAAGACAAGAGACAAGCGACACAATCGGAGAGATGCAGAGGACCGACAACAGACGCGGATGCGCTCATATAACAGAATAAGGCAAAAGAGCGACGATTCTGCGGTGGAACACAGTTGAAGCCCAAAGAAAGGATAAGAAGAGTGTTGTAGCACAAATCCAAATAATGTGATAGTTAATCTTACTGACGCTGCTTCACACTTGATTTCCTGGAGTTTGAAGGAGTTTAAAGAGATTACTTAAGTTGTTATCAGATAATTAATTGGACAGTATAGAAGCACATAAATCAATCCATTCAGAAATCAATAAATCCATAGTATTGTGCAACAGGAGAAGGGCCATCCAGACTGTTAGTCTACTGTTAAACAACAACTAGGCTACTGAAACAACACCATAAAGATAGAAAAAAAGGGAAATTCactaaattcaaaatggatggaAGTCTAGGGGAGATGTCTGTCCAAATCCACTCTGAGCTCCATAGTCAGGATGGCAGAGCGATGCTGCATTCACGGGACCTTTCAGCTGCTTTCCCCAGGCCCTCCCTTGGGGGGCACTCCATGTCCCTGGAGCCTGAGCACCGACCTCCAGGTTTCGACCACTCCATGTCAGCACTGGGCTATGGAGGAGATGCTCCATCTAGCTGTGGCAGCACGTACACCACACTAACCCCCCTGCAGCCTTTTGATGACAAAtttcaccaccaccatcaccaccaccatccctGCCTGCCGGTCAGCAATGTCATCGGGAGCTTTACTCTCATGCGCGAGGACAGAGGCCTGGGTGGCAACTTCTACAACCCTTACGGCAAAGATCTGGGGATGACACAGAACCTTTCACCACCTTCTACAGGCTCTGGCTTGGGGACACCCATGCATGGTTACGGGACACTGGGAAACAGCCCCAACGGCAATGGTGGCCAGATGCTTCCAAGTGGTTACGAGGTCCACGGGGGCAACATCTTCTGCAGGACGGCAGACTTCGGCAGGGAGATGTCCCCTCCAGGGCTGGGCGGCGACTCGTCAGTCAGCCATCAGCTGAACAAGATGGAGGCTCACCAACACGCGCCCAGCCACCATCCTCACATCTACAGTCagcactaccaacaccaccaccccagcCAACAGTCCTCAAAGGCCGGGGAGCTCCCCCACTCCTCGTCCTCTTTGCCCAGCAGTGAGGGCATGCTGCCCAGCTCCcagggtggtggaggtggaggggctgGAGAGGAGATCGACACCAGGGACGTGGCCCAGAGGATCATCACTGAGCTGAAGAGGTACAGCATTCCCCAGGCCATCTTTGCAGAGAGGGTGCTGTGTAGGTCACAGGGCACTCTGTCTGACCTCCTGAGAAACCCCAAGCCCTGGGGCAAGCTCAAGTCTGGCCGCGAGACCTTCAAGAGGATGTCCCGCTGGCTGCAGGAGCCCGAGTTTCAAAGGATGGCCTCACTGCGTCTGGAGGCTTGCAAGcggaaggaggaggagcagagtaaACTGGAGCGCAACCAGGGTCCCAAGCGCACCAGACTGGTGTTCACGGACCTCCAGAGGCGTACCCTATTGGCCATCTTCCGGGAGAACCACCGGCCAGCCAAGGACCTCCAGGTCACCATCTCCCAGCAGCTGGGCCTGGAGCTCTCCACTGTCAGCAACTTCTTCATGAACGCCAGGCGCCGCAATGTCAACAAGTGGGCGGAAGAGGGCCGCCCCTCCTCCACAGGCTCCTCGGGCTCCAGCGTGTCCTCCTCCGCCGTGTCCTGCAGCACGGCCTGATGGAATAGAGGTGGGCTGGGTGGGCGTCGTGGCAGCAGAGGGCACATAGGCTGGTCTAGGTAGAGATCAGGCGTAATAATGTACTCCTCATTAtcagagggagtgatggagttgGCGTAGTTTAGTTTTTTATGAAGAATTATCACAGAGCATTTCAGACCAAAGTTGATCTCTCCTTGATATTGAAGCGGTGATACCCAGAATAATATGAGCACTTGTATGAGACAAGTTCCTATAATTTGAATGGTCGTGGGTGAATAGTTTATTTGAATTTTAAGAGGGTAACAGTGAGCATCCTTGATTTCTATAATTTTATCACATTCAATTTTAATATGATAGgttatgaaatcaaatcaaatttcatttgCCACATGCTTtgttaacaacaggtgtagactaacagtgaaatgcttacttacgggtccttttccaacaatccaGAGTTAAAAGAtgaaaagttattttttttaataaaaaaaatggcaCAAGGAATAGTATGGTTATGAGGTTATTAATAATCAGGAGGAGCCATACTTTTGTTTGCCCTTAGGGCTAATTTCATCTCCCTTACTAGAAACAGAAATCAAGAGGCATCGCTGCGTTGCATAACACCCCTAATTCAAATTTTCACCACCCGTTACATCGACAGATCTCCATCATATGTCCTTTGTTTCTCTGAGGAGTCAAGATGAAGGTCACAGAGAATAACATGGGGATTGTGACAAAATCAGAGCTCCATCACGTTTTCTAAAGAATGCGGCATGTGTTCCCATATAACATGGTTCGCAGGACTGCAGAACTCTCTGGATGATCAGGAGGTTATTTCTCACTCCACGATTCTCAGTTTTCGATCATTACCTGTCACGAGAACCTTGACTTGTCTTTTACACTTCTTGACAACGGTACCAGCTTGAATGAATCACAGTTTTCAAGGAGCAACCTTGGTGTGTCTCATTTTAAATCGGGACagaatctgtaaacaagggcagaATTTCAAGGGATGCCAAGTCAGAGACGTTTTGATGCAACCCTCCAGCTTTAAGACATTGACTGACCTACCAAACAAACGCTCTGTAGCCATTTTGACTCAACCAAAACACTTTGAACACGACGGTCGCAAAGGAAGAAGTACTTGTAACACAatgtatagtagtagtgtagtattttTTCCACTCATGTTTCAAAACACTTAACTGAACAAACCTCGGCTCCATtgcaaatctttttttttttttttttacagacgcCTAGAAAATGGAGGAATGTGATTCTTTTAGCCCTTTTGTACAGATTTCAAGCACATTGCTCTATTTATAGAAATCCAATGGAAGTATGAGTTGTTGTTGTTCCAGTCCTGCTACGTACACCAAGGTCATTTTAGTTCCTCGAGGAACGGTTTTAACATGCCTCTTTATAACCAGTTTCATTGGAGCAAGAATTTAAAATGCCATTGCTGAACTGATCAATGTATTTATTACTGCATTTGTGTATTtattgtttttcttttgttttctcTCTATTTATTTGGTTATTTATTTATGCTATCTATATACTGTAAGTATTTATTTAATAATGCTTTGTATGTCTGTGTGAAACTGACTTTTTTTTCTGATGGGCACTTTTAGTTGTAGAATCCCATCGTAATACCAAAGATTAAGATTGTCCTCCCTGAATGTATGGCCTaaacccctttcctctccccctcgaCTCCCAGTGATGTTACGTATCTCTCTCTTTAAGGCCTTTTTTTTATAGAATAATGGGGATTTCTTTACTATTGGCAAATGTCTCTGTGGTCAGGTCTTATGCCGAGGCTAAGCTTGTTTGAATGTTGTGGTAATGTGACATCTCATAGGCTCACAGGTTGCTTGTAAAATTGTGTTCAAACATCATTCGGCAGAGTGTCTGGAGTGTCCAGGGTTGCACTTACAGAGCATTTCAGGCTCTTAAGTGTGAATCCTTTGAGACCCCATGGAAACATGCATGCTGTGCATCTTCCTGGGGTTTGCATAGCAGGGACTCCCCTTGCTGCATTTCACACACTCCTGTCTATGTCCTGCTCAATGTGATTTCACCATCCTCCAGACTCATCCCTTCTGCCAGTCTTCTCAGTTCCACAGGCTCCTCTAGCATTTTCTCATTTTTGCTTTGGCGGGTAGTGGGGAGGGATAGCTTGTCCACCAGCTAACGTGCGCTTCTCCTGTCTTTAACCTTgggaggggcgtgttgtcggggcCCCTTCACAGCGTGCACTTGAAAGACGGGCGGTCATGAAAGAGGCCATCGACTTTTGCAGACTTCAAAGGGAGCCTTTTTATCCGTCTCCTCTCTGCGTATCTGGTTTAAGGGTCCGCTCCTGGCCAGACCCGTGGGCTTAGGGGCATTCAAAGGGGGCGGGGAGATCAGAAGGGTGGCTGAATCACCCCTGAACAGGGTGCAATGTTTTGGGAGAGGGGGTGGAAAGGCACAATAGAGTAGAATTAAAGTTTAATGAGCAACAATTGTAAGCATGCTGGGACCAAGGGAGGGGGCCAGTCTGGTGCAGGGAACATGAAAACCCCTACCAGTTTTGATGTTCCTTTTTTTCAAGCTTGTCATATGGTGTTCTATCAAAGACAATAGGTCCCCATGAcacctttatttttttttacacggACCATATTTTAGAATAGAGTCTGCCCTCAAATGGGGAGAGACTTTTCAGTCATTGTCTGCTCTGTCTTAACTGAGGAGAGAACTCCCCTTTGTACGGAGAGTTGATAGAGTATTGCAGGTGTCATCAGTTTACGCCTGTTGCACCCCCTAGTGGAGTGTAAAGAAATGTCTCTCTAGATTAAAGGACATTTTAGGCGAGGATGTTTTCAAGCTCTTCTGGGGCTTAAAAACACAGGTACATTATATACTAAAGTATAGCTGAATATGCATGGATACCCTCTGATATTGTTTTTGTACTATAAGTGGGGTTATCATTCCATCTTAATTAATACACCAGAAATCCAAAGATAGTGAAGTCCAGTGAGATGTGTTAAGTAACACAGTATTTTTAGGTTCAGCATTTGAAGTTGGAACTGAGAGATTGACATGAAGTTGTGACTGTAGAGGAAGTATTTTGACTCCGTAACCCCAGTGTTCCCTTTGTCCCCCTGTGTACATGAATACTTACCCATCTACCTCAACTGTGTGAGATGTTGTGTGGCAAAGAAGTTTCTTAACCAAAGATTCCATCCTTTCAgggtgtctgtctatctgtctgtccatctgtctctcatGCTTTTTCAAAACCAAATGTGCTGGAATCAATCTGTTACAGGAGCAACCAAGCCCCATCCAGCCAAAGCGTAGTCCAGTGTACTACAGAAGTCATATTTACCAATAATCTGTATATAATCATTTTCAAGACCAAAAAAGTAGGTGACAATCCAAGCAAGGAGGATCTTGCTGTAATCAACGTTGCCTATTCCTTGTACCAAACTAGAATCATGTGACTTACTGTAACAGTTATGAAAGCCCAAGAATCAAGAGTTCAACCAAAAACAAAAGGTCAAGAGGAGACTAAAGCTATTTTTTCACATTTGTAAAACCATTATTCCTTTTCCAATATGTTAGTGTATTTGAAATACTGTTTGATCCCACTGTTGGGAGCAGGAATACATGACTCCATTCAAAAGCTTAAACGAGGCCAAATTGGGGGAAATATTGTATTTGACATGGGTTTGTGTCTGGGTTCCTGAACTAGGACACCCACCATACTTATCGTGCCATTCTCGTCCATGTGTTAGACTAACTAATGAACGCGGCTAACCAACCAAAGGCTTAAAacacaacactttacatgtcaaTCATGGTGGGACATTTTGTAACAACAACTAAAGAGAATCCCTTTGAATACCTCATGTGAAATTGTTTGTTGTGATGTTGCACCAAAAAATTAAAATGACTCATTTGTAACCCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270342 lncRNA upstream 50260 23765855 ~ 23770162 (+) True G236549
TU270424 lncRNA upstream 54581 23765552 ~ 23765841 (+) True G236625
TU270422 lncRNA upstream 58071 23761979 ~ 23762351 (+) True G236623
TU270421 lncRNA upstream 61038 23758573 ~ 23759384 (+) True G236622
TU270415 lncRNA upstream 70916 23749270 ~ 23749506 (+) True G236616
TU270453 lncRNA downstream 154 23832403 ~ 23840472 (+) False G236647
TU270459 lncRNA downstream 4296 23836545 ~ 23839623 (+) False G236647
TU270455 lncRNA downstream 9118 23841367 ~ 23850161 (+) False G236647
TU270456 lncRNA downstream 9118 23841367 ~ 23844466 (+) False G236647
TU270457 lncRNA downstream 9118 23841367 ~ 23842769 (+) True G236647
XM_021593930.2 mRNA upstream 25223 23780400 ~ 23795199 (+) False LOC110514613
XM_036972569.1 mRNA upstream 25223 23780400 ~ 23795199 (+) False LOC110514613
XM_036972575.1 mRNA upstream 25223 23780401 ~ 23795199 (+) False LOC110514613
XM_036972576.1 mRNA upstream 25223 23780401 ~ 23795199 (+) False LOC110514613
XM_036972561.1 mRNA upstream 25223 23780402 ~ 23795199 (+) False LOC110514613
XM_021593968.2 mRNA downstream 35018 23867267 ~ 23886989 (+) False LOC110514708
XM_021593971.2 mRNA downstream 48664 23880913 ~ 23886989 (+) False LOC110514708
XM_036972657.1 mRNA downstream 48664 23880913 ~ 23886989 (+) True LOC110514708
XM_021593980.2 mRNA downstream 59636 23891885 ~ 23907345 (+) False LOC110514755
XM_021593972.2 mRNA downstream 76639 23908888 ~ 23932207 (+) False LOC110514733
TU270430 other upstream 25227 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 25272 23792797 ~ 23795150 (+) False LOC110514613
TU270431 other upstream 25272 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other upstream 25345 23792797 ~ 23795077 (+) True LOC110514613
TU270150 other upstream 469607 23350091 ~ 23350815 (+) True G236372
TU270506 other downstream 76501 23908750 ~ 23929087 (+) True LOC110514733
TU270587 other downstream 223070 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 917156 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 933417 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 943030 24775279 ~ 24775945 (+) True G238050

Expression Profile