RNA id: XM_021593956.2


Basic Information

Item Value
RNA id XM_021593956.2
length 1446
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC100136261
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23832402 ~ 23840512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCACAAATAAATATAAAGCAGGAAAACAGATCCCACTGAAATCAATTGACGCGCCTTGCTCTCCTCTGAAGGCATCAGGTGCACTCCGAGTTTTACAAGGCATGATGTTGTGGAGCCTGCTGCTCGCTGCACTATGTGGCACAGCATTTGCCCTGTTTGACCCAATGCTGGAACAGCACTGGCAGATGTGGAAGAAGACACATGGCAAGAACTACCAGACTGAGGTTGAGGAGCTGGGCCGAAGGGAGGTCTGGGAGAGGAATCTTCAGCTGATCAGCCTCCACAACCTGGAGGCGTCCATGGACATGCACACCTATGACCTGGGCATGAATCACATGGGGGACATGACCCAAGAAGAGATTGCCCAGTCTTATGCCTCATTGCGTGTTCCTGCTGACCTCAAGAGGGAGCCCTCTGCATTTGTAGGATCCTCCGGTGCCCCCATACCTGATACCTTTGACTGGAGAAAGAAGGGCTACGTCACTAAAGTCAAAATGCAGGGCTCCTGTGGCTCCTGCTGGGCATTCAGCTCTGTTGGAGCCCTGGAGGGCCAGCTGATGAAGACCACAGGTAAACTGATAGACATCAGCTCCCAGAACCTGGTGGACTGCTCCTCCAAATACGGCAACAAGGGCTGCAATGGTGGCTTCATGAGCCAGGCCTTCCAGTATGTCATCGACAACCAGGGCATTGACTCTGACCAATCCTACCCCTACAAGGGAGTGCAACAACAGTGCAGCTACAACCCTGCTCAGCGTGCTGCAAACTGTTCCAAGTACAGCTTTCTACCTGAGGGGGATGAGGGGGCACTGAAAGAAGCCCTGGCCACCATCGGACCCATCTCTGTTGCCATTGATGCCACCCGACCTCATTTTACCTTCTACCGCAGTGGAGTTTACAATGATCCAACTTGCACAAAGAAGATAAACCATGCTGTCCTTGCTGTGGGGTACGGTACCCTGGGCGGGCAGGATTACTGGCTGGTGAAGAACAGCTGGGGCTTATCGTGGGGAGACCAGGGATATATACGGATGTCACGCAACAAGGACAACCAGTGTGGCATCGCCTTGTACGGCTGCTACCCTGTCATGTAACTCCTGCCAATCAAAGGGGTCTAACTGGAAAAGCTGAGCCCTTTTATTAATTTAATGTAATTCATTTTTACTTCCTCCATTGTTTTAGTGTTGTTTTTACCATTTCACTTTCTATCACTTCATGTCTATATAGACAGTACTTCTTTAGAAGTGTTTTTACAAATCATATATAAGTCCAATGTGATTATCTACATTATCACCGTAGCTAGcatccagggggtgtacttgtacatcaagctgcctcacgctacagaaacaggagatgcaTGCCAAGGCTCGTGCAAGGCTACATACTTATttaaatcaaagtatattttgtCATCAAATAAAAATAACTTTTAAAGAACAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01368 CTSS; cathepsin S

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271290 lncRNA downstream 82581 23749554 ~ 23749821 (-) True G237396
TU271247 lncRNA downstream 145672 23685154 ~ 23686730 (-) True G237366
TU271246 lncRNA downstream 146288 23685154 ~ 23686114 (-) False G237366
TU271030 lncRNA downstream 445999 23380119 ~ 23386403 (-) False G237162
TU271353 lncRNA upstream 26760 23867272 ~ 23867534 (-) True G237457
TU271358 lncRNA upstream 31158 23871670 ~ 23871871 (-) True G237462
TU271359 lncRNA upstream 31749 23872261 ~ 23872770 (-) True G237463
TU271360 lncRNA upstream 32804 23873316 ~ 23873537 (-) True G237464
TU271366 lncRNA upstream 41135 23881647 ~ 23884871 (-) True G237470
XM_021593917.2 mRNA downstream 52244 23771511 ~ 23780158 (-) False LOC110514600
XM_021593909.2 mRNA downstream 61526 23768099 ~ 23770876 (-) True LOC110514588
XM_021593886.2 mRNA downstream 102504 23719389 ~ 23729898 (-) True LOC110514538
XM_021593895.2 mRNA downstream 119080 23710004 ~ 23713322 (-) True LOC110514548
XM_036972497.1 mRNA downstream 268911 23406253 ~ 23563491 (-) True LOC110514498
XM_036972601.1 mRNA upstream 829 23841341 ~ 23848800 (-) False LOC110514697
XM_021593963.2 mRNA upstream 829 23841341 ~ 23849924 (-) True LOC110514697
XM_021594003.2 mRNA upstream 135362 23975874 ~ 23980300 (-) True LOC110514815
XR_005041888.1 mRNA upstream 227418 24067930 ~ 24078853 (-) True LOC118947709
XM_021594009.2 mRNA upstream 348697 24189209 ~ 24198813 (-) False LOC110514831
TU271267 other downstream 52267 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 643371 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1257413 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 2076901 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 2088991 21738845 ~ 21743411 (-) True G235092
TU271572 other upstream 340044 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 340044 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 680707 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 929050 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 929192 24769704 ~ 24770323 (-) True LOC110515154

Expression Profile