RNA id: XM_021593963.2


Basic Information

Item Value
RNA id XM_021593963.2
length 1645
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110514697
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23841341 ~ 23849924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGAAACTTTTCCCCCTCCTAAACTCCCGTCGCACTTCCTCAAACTCCAGACTATATAACTACTCACACGGCGACCTACTTCATCGCAGGGAAACAACTGGTCAAAGGAATTCATCCGACACCTTCTCTCCAAGTCTACAACCAAGAATGCTGCTGTGTGGTTGTGTGCTGTTGCTCTTGGGCTCAGTCCTAGCCCATCCTCTGAATGAGATGTCACTGGACGCACAGTGGGACTCCTGGAAGACCACCCACCTGAGAGAGTACAACGGCCtgGGGGAGGAGGCGATCCGTAGAACCATCTGGGAGAAGAACATGCGTCTGATCGAAGCCCACAATGAGGAGGCCGCTCTGGGCATTCACTCGTACGAGCTGGGCATGAACCACCTGGGAGACATGacgTCAGAGGAGATAGTTGCAAAGCTGACTGGCCTTCAGGTGCCCATGAACAGGGACCGTAGCAACACCTGGATCCCTGGCAACAATGTGGTGAACCTCCCCAGGTCCATCGACTACCGCAAGAAGGGCATGGTGACCCCAGTCAAGAACCAGCTCTCCTGTGGCTCCTGCTGGGCCTTCAGCTCTGCTGGGGCCCTGGAGGGCCAGCTGGCAAAGACCACAGGCAAACTGATAGACCTCAGCCCCCAGAACCTGGTGGACTGTGTTACTGAGAACAATGGCTGTGGTGGAGGCTACATGACCAACGCCTTCGAATACGTTGAGGAAAACGGAGGCATCGACACAGAGGAGGCTTACCCTTACCTTGGCCAGGATGAGCAGTGTGTCTACAACGCGTCTGGCATGGGTGCTCAGTGTCGCGGGTTCAAGGAGATCCCTGAGGGAGACGAGCAGGCACTGACCAAGGCTGTAGCCAAAGTGGGGCCTGTGGCTGTGGGCATCGATGCCACCCTCTCCACCTTCCAATTCTACCAGCGAGGTGTGTACTACGACCCCAACTGCAACAAGGATGACATCAACCACGCCGTGCTTGCAGTGGGCTATGGACAAACTGCCAAGGGCGAGAAATTCTGGATCGTCAAGAACAGCTGGAGCGAGAGCTGGGGCAAACAGGGCTACATCATGATGGCACGTAACCGCGGGAATGCGTGTGGCATTGCCAACCTGGCCAGTTACCCCATCATGTGAACACCAAGCGGCAGAGGGCACCATGGAAGCAGGGAAGCTAAACCACCAATCAATGACTACACCCAATACAGAAAATAACACTATGTTTCTGGAATAGCACATTCATATAGTCTGGAGGTTTGAGTATCCCAGAGTTCTTTTGCAAGCACTTTTAAACGCCCTACATCAAGTCTTACTGTTATATCTTCAAACTGCCAGACTTCAATTGTAGTCTGATCTACAGTGGAACAACTATGATTGTGATGAAGGATGTGCGTAGTGCACAGCACTTTACATAGGTTGTATTCAGTGTGTCAGGTCAGGTAACATTGCTGTGCAATGGGAGTTTTGTCTCACTTTCCTGTCAATGCAAAAAGGGCTTGTTGATCAAGATTGCTCCTGGTGGGTTTTTTGATGATGTTGACTTTTATTTTATTGTTCAGCACTTTTACACCAAATTCTGTTGATTGAATTGTAACATTGTTTTCTATTAAATGGAATAAAAGTTGATTCATTtgaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01371 CTSK; cathepsin K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271290 lncRNA downstream 91520 23749554 ~ 23749821 (-) True G237396
TU271247 lncRNA downstream 154611 23685154 ~ 23686730 (-) True G237366
TU271246 lncRNA downstream 155227 23685154 ~ 23686114 (-) False G237366
TU271030 lncRNA downstream 454938 23380119 ~ 23386403 (-) False G237162
TU271353 lncRNA upstream 17348 23867272 ~ 23867534 (-) True G237457
TU271358 lncRNA upstream 21746 23871670 ~ 23871871 (-) True G237462
TU271359 lncRNA upstream 22337 23872261 ~ 23872770 (-) True G237463
TU271360 lncRNA upstream 23392 23873316 ~ 23873537 (-) True G237464
TU271366 lncRNA upstream 31723 23881647 ~ 23884871 (-) True G237470
XM_021593956.2 mRNA downstream 829 23832402 ~ 23840512 (-) True LOC100136261
XM_021593917.2 mRNA downstream 61183 23771511 ~ 23780158 (-) False LOC110514600
XM_021593909.2 mRNA downstream 70465 23768099 ~ 23770876 (-) True LOC110514588
XM_021593886.2 mRNA downstream 111443 23719389 ~ 23729898 (-) True LOC110514538
XM_021593895.2 mRNA downstream 128019 23710004 ~ 23713322 (-) True LOC110514548
XM_021594003.2 mRNA upstream 125950 23975874 ~ 23980300 (-) True LOC110514815
XR_005041888.1 mRNA upstream 218006 24067930 ~ 24078853 (-) True LOC118947709
XM_021594009.2 mRNA upstream 339285 24189209 ~ 24198813 (-) False LOC110514831
XM_036972836.1 mRNA upstream 339285 24189209 ~ 24198813 (-) False LOC110514831
XM_036972840.1 mRNA upstream 339285 24189209 ~ 24198813 (-) True LOC110514831
TU271267 other downstream 61206 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 652310 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1266352 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 2085840 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 2097930 21738845 ~ 21743411 (-) True G235092
TU271572 other upstream 330632 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 330632 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 671295 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 919638 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 919780 24769704 ~ 24770323 (-) True LOC110515154

Expression Profile