RNA id: XM_021593968.2


Basic Information

Item Value
RNA id XM_021593968.2
length 2483
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC110514708
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23867267 ~ 23886989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAATAAAGTAGTCGACCTAAATTATTTTCCGTAGCGTAATTATCCTAccccagagggtggtgcagtagTCAGAATAAATTAATGAAGGAGGACAAATTAAATTGTGTAAGGTCTCAAGGCATATGTTTTAAATTCTTGTAAAACATGATAAATCAACCAGCAACCGACACGAAAAGCTTAGGCGAGAAGGAACCCGAACGTTTGGAGTTGTGCGTAAAATATGGACATGTTTTACTATCAACGTTTTATTGAAGTCATTAGCTGGCCACTTGCAAGGACATGTTTTTCACAGAACATCATCTCTTATAGAAGACTTAACTCAAGTCTGATCCCAACTTGACCACCACTGGTTATGAAAACCTGCATCCTCACAGTAAATCGGCAGGAGGCAAGATGTTTGTGGAGTCTGTTGTCAGATGGGGGGCATGGAGCATCTTGCTCCAGTGTGGATTATTGGGCGTGTCAGCAGGGGACTTCCCCTGGCCTTGCCCTGCCAGGTGTGTTTGTCGGCTTGAGACTTTAGAAGTTAACTGCTCTGACAAACAGCTGACTTCTGTGTCTGAGGGCTTCGCTAGTGGCACCCAGCGCATCAATTTATCTCGTAACAAGCTGAAGATGCTGGGTCGTCGCCAGTTCTTTGGCATGACCCAGCTAGAGGATCTGGACATTAGTGACAATGTCATTGCCATGATTGAAGTGGAGGCTTTCCAGGGCCTGCAGAACCTCAAGACCCTGTGTATTAGGAGCAATCGCCTCAAGATCATCTCTGTGGGGGTCTTCTCCGGACTGCCCAGCCTGCGCTTCCTGGACCTGAGTGAGAACGAGATCCTGGTCTTTCTGGACTTTACTTTCCGTGAGTTGGTGAGCCTTCACCAGCTGGAGGCTGGGGAGAATGACCTGGTGTTCATCTCCCAGCGGGCCTTTACCGGCCTGCAGAACCTGCAGGAGCTCAATCTGGACCGCAGCAACCTGACCTCCATCCCCACCGAGGCACTATCCCAGCTCCAGAGCCTGACTCGGCTGCGCATGATCCGCCTCACCATCTCGGCGCTGCCCAACAATGCCTTCCGCCGCCTGCATCGGCTGCGTAGCCTCGTCATCTCCCACTGGCCCTTGCTGGACAAGCTGGCCAGCAACAGCCTGATTGGCCTCAACCTCACCTCGCTGGTCATCAGCAGCTGCAATCTCAGTGCTGTCCCATACCAGGCACTGCGCCACCTGGTCTACCTGGGCTACCTGGACCTGTCCTACAACCCCATCACAGCCATCCAGGGTAACCTGCTGGGGGACCTGTTGCGGCTGCAGGAACTGCACCTGGCTGGGGGCAACCTGCTCCGCATCGAGCCAGGGGCCTTCAGGGGGCTGGCATACTTCCGTCTGCTCAACGTGACATCCAACCAGCTCAGCACACTGGAGGACAGTGCCTTCCACTCGGTGGGGAATCTGCAGGTCCTGCGGCTGGATGGAAACCCCCTGGCCTGCGACTGCCGACTACTCTGGGTGGTCCGCCGGCGACAGCGCCTGAACTTTGACGGTCGCCAACCCACCTGCTCCACACCGGACATGGTGCGAGAACGGGAATTCCGGGACTTCTCAGAGAAAGAGCTCCCGAGATTGTTCACCTGCCGGCAGGCCCGCATTGTAGACCGCAGATCCCAGGAGGTCAGGGTGGAGGAGGGCACTACGGTGCTCTTCTCCTGCAAGGCAGATGGTGACCCAATGCCCTCCTTTACCTGGTTGTCAGCCCAGCGGATTCCTCTCTCCACTACGGGGCGCATCAGGGTGTTGTCCAATGGGACTCTAGAGGTACGCTATGCCCAGGTTCAGGACAGCGGCACATACCAGTGCACGGCGGGCAACGCAGCTGGCAACGACAGCCTGTACGTCAGCCTCTATGTGAAGGGTTTCCCACGTAACCGCACCATGCCCTTTTTCACCGACGAAGGCTGGATAGAGTCCTCACACGCCCCTACTGCCAACTCCTCTGCCCAGGTGGCCAACCAGTACCCATTTGATGCCAAGACATTGATCATCGCCACCACCATGGGCTTCCTGTCCTTCCTCAGCTCAGTGGCTATCTGCTTCGTCTTCATGTTCTTCTGGAGCCAGAGCAAGGGGCAAATCAAACACACAGCCACCATCGACTATGTGCCCCGTACCTCAATGGGggtaggaggagggggagggggagggggtggaggggatgCTGGCAAGTTCACCATGAAGCTTATCTAAGGTTATGTGGGAGAGAACTTGGGACACATTGACTGTGTCACCCCATGAGGGTGAAGGCTCTACAAGGACACAGGGCCACGGTCTGCCTTCAGAAAGCTAGATCCTCAGTGCACCCTTAACATACAgaaattatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270455 lncRNA upstream 17106 23841367 ~ 23850161 (+) False G236647
TU270456 lncRNA upstream 22801 23841367 ~ 23844466 (+) False G236647
TU270457 lncRNA upstream 24498 23841367 ~ 23842769 (+) True G236647
TU270453 lncRNA upstream 26795 23832403 ~ 23840472 (+) False G236647
TU270459 lncRNA upstream 27644 23836545 ~ 23839623 (+) False G236647
TU270471 lncRNA downstream 6609 23893598 ~ 23907333 (+) True LOC110514755
TU270502 lncRNA downstream 45320 23932309 ~ 23933163 (+) True G236684
TU270504 lncRNA downstream 46299 23933288 ~ 23933833 (+) True G236686
TU270505 lncRNA downstream 46947 23933936 ~ 23934443 (+) True G236687
TU270538 lncRNA downstream 58557 23945546 ~ 23945785 (+) True G236707
XM_021593955.2 mRNA upstream 35018 23820422 ~ 23832249 (+) True LOC110514668
XM_036972569.1 mRNA upstream 72068 23780400 ~ 23795199 (+) False LOC110514613
XM_021593980.2 mRNA downstream 4896 23891885 ~ 23907345 (+) False LOC110514755
XM_021593972.2 mRNA downstream 21899 23908888 ~ 23932207 (+) False LOC110514733
XM_021593974.2 mRNA downstream 41338 23928327 ~ 23932207 (+) False LOC110514733
XM_021594000.2 mRNA downstream 51961 23938950 ~ 23941425 (+) False LOC110514794
XM_021593997.2 mRNA downstream 53614 23940603 ~ 23941425 (+) True LOC110514794
TU270430 other upstream 72072 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 72117 23792797 ~ 23795150 (+) False LOC110514613
TU270431 other upstream 72117 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other upstream 72190 23792797 ~ 23795077 (+) True LOC110514613
TU270150 other upstream 516452 23350091 ~ 23350815 (+) True G236372
TU270506 other downstream 21761 23908750 ~ 23929087 (+) True LOC110514733
TU270587 other downstream 168330 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 862416 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 878677 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 888290 24775279 ~ 24775945 (+) True G238050

Expression Profile