RNA id: TU270506



Basic Information


Item Value
RNA id TU270506
length 654
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC110514733
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23908750 ~ 23932207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcccaagtcaagcactgcccTGCAGAAAAGGGAATGTCTTCATCCACCACATTCCACATTCCTGAGCGCGTAACAGAGCAATGAAGGAAATACGACTTAAAGGGCTGGACTTCTTCCTTCATTTCTCATAAGCGTGATCAGTCACTGACAACATATGCTAAAGTGTTGAAGGGCTGAATTGGTTCACTAATCTTTCCTCTTCAGATCGAAAATGTGCATGCACACAATGATTCTACTGGGTTTTGTGTGGTTTAGTCTGCCACTTCTTGTGGCCCTTGCCTCACCAACCCCTGCTACGAATGATGAGAGAGGCCCCTGTCAAATCTACAACTCTGGTCGCTCCGCAAACTGCCTTGGTCAGCAACTGGATCATGTTCCATGGAAGCACCTCCCTTCCACGCTTGAAAGGATAGATCTCTCCTACAATGAAATTCATGCCATTCGTGTTAATTACTTTTCTCGCCTACCTCATCTTCGTGTCCTCGAGCTGCAGTTCAACAACATCTCTGTGATTGAGGACCGTGCCTTCCACAACAACCCCCTCCTGGAGCATCTTAACATCTTTAACAACTCCCTAGAGGAAATCCCTGCCAACGCTTTGCAGGACCTCTTCAATCTAAGGGAACTCCTTATGTCGAATAACCTTTACACCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU270471 lncRNA upstream 1417 23893598 ~ 23907333 (+) True LOC110514755
TU270474 lncRNA upstream 18953 23883280 ~ 23889797 (+) False G236658
TU270475 lncRNA upstream 18953 23883280 ~ 23889797 (+) True G236658
TU270489 lncRNA upstream 33491 23874993 ~ 23875259 (+) True G236672
TU270488 lncRNA upstream 37185 23870881 ~ 23871565 (+) True G236671
TU270502 lncRNA downstream 3222 23932309 ~ 23933163 (+) True G236684
TU270504 lncRNA downstream 4201 23933288 ~ 23933833 (+) True G236686
TU270505 lncRNA downstream 4849 23933936 ~ 23934443 (+) True G236687
TU270538 lncRNA downstream 16459 23945546 ~ 23945785 (+) True G236707
TU270577 lncRNA downstream 102548 24031635 ~ 24031848 (+) True G236743
XM_021593980.2 mRNA upstream 1405 23891885 ~ 23907345 (+) False LOC110514755
XM_021593968.2 mRNA upstream 21761 23867267 ~ 23886989 (+) False LOC110514708
XM_021593971.2 mRNA upstream 21761 23880913 ~ 23886989 (+) False LOC110514708
XM_036972657.1 mRNA upstream 21761 23880913 ~ 23886989 (+) True LOC110514708
XM_021593955.2 mRNA upstream 76501 23820422 ~ 23832249 (+) True LOC110514668
XM_021594000.2 mRNA downstream 9863 23938950 ~ 23941425 (+) False LOC110514794
XM_021593997.2 mRNA downstream 11516 23940603 ~ 23941425 (+) True LOC110514794
XM_021593992.2 mRNA downstream 17721 23946808 ~ 23950487 (+) True LOC110514781
XM_036972687.1 mRNA downstream 28015 23957102 ~ 23975804 (+) False LOC110503942
XM_036972694.1 mRNA downstream 28015 23957102 ~ 23975804 (+) True LOC110503942
TU270430 other upstream 113555 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 113600 23792797 ~ 23795150 (+) False LOC110514613
TU270431 other upstream 113600 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other upstream 113673 23792797 ~ 23795077 (+) True LOC110514613
TU270150 other upstream 557935 23350091 ~ 23350815 (+) True G236372
TU270587 other downstream 126232 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 820318 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 836579 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 846192 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 1266200 25195287 ~ 25199234 (+) True G238540

Expression Profile