RNA id: XM_021594000.2



Basic Information


Item Value
RNA id XM_021594000.2
length 499
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110514794
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23938950 ~ 23941425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACGTTGTAGGTTTCACCGGTGGGAGGCGCCTGATTTGAATTTTGTCTCAGGTGAGATGCATAAAACAGGTAAGATGAGAGTCGACGCCACTTCTGCTTCGTTTGTCATCAGCTTTGAGGTATTCACAGCAGTGTAAAATGGGTTCCAAACTCGAGAGTGCAATGGAGGGGCTAATTCAAGTGTTCCACTCATACTCCTCAAAAGAAGGGGACAAGTACAAGCTGAGCAAAGTTGAGCTGAAGAATCTATTACAGGGTGAACTGAGTGAATTCCTGGCGGCATGCAAGGACCCTATGGTAGTAGAGAAGATCATGAGTGATCTGGATGACAACAAAGATGGCGAAGTGGACTTTCAGGAGTTTGTCGTCTTGGTTGTTGCGCTGACGGTGGCCTGTAACGAGTTCTTTGTAGAGGGCCTGAATGAATGAGTTGGGGGAAACAGACCTACACTTTCTACTCATTATTCTGTTAATAAAACAAACGTATGCTTTCATTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU270505 lncRNA upstream 4507 23933936 ~ 23934443 (+) True G236687
TU270504 lncRNA upstream 5117 23933288 ~ 23933833 (+) True G236686
TU270502 lncRNA upstream 5787 23932309 ~ 23933163 (+) True G236684
TU270471 lncRNA upstream 31617 23893598 ~ 23907333 (+) True LOC110514755
TU270474 lncRNA upstream 49153 23883280 ~ 23889797 (+) False G236658
TU270538 lncRNA downstream 4121 23945546 ~ 23945785 (+) True G236707
TU270577 lncRNA downstream 90210 24031635 ~ 24031848 (+) True G236743
TU270586 lncRNA downstream 111467 24052892 ~ 24053123 (+) True G236752
TU270597 lncRNA downstream 124539 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA downstream 124539 24065964 ~ 24068498 (+) True G236762
XM_021593972.2 mRNA upstream 6743 23908888 ~ 23932207 (+) False LOC110514733
XM_021593974.2 mRNA upstream 6743 23928327 ~ 23932207 (+) False LOC110514733
XM_021593980.2 mRNA upstream 31605 23891885 ~ 23907345 (+) False LOC110514755
XM_021593968.2 mRNA upstream 51961 23867267 ~ 23886989 (+) False LOC110514708
XM_021593971.2 mRNA upstream 51961 23880913 ~ 23886989 (+) False LOC110514708
XM_021593992.2 mRNA downstream 5383 23946808 ~ 23950487 (+) True LOC110514781
XM_036972687.1 mRNA downstream 15677 23957102 ~ 23975804 (+) False LOC110503942
XM_036972694.1 mRNA downstream 15677 23957102 ~ 23975804 (+) True LOC110503942
NM_001124662.1 mRNA downstream 78326 24019751 ~ 24029429 (+) True rhgb
XM_036972730.1 mRNA downstream 164091 24105516 ~ 24184256 (+) False LOC110503950
TU270506 other upstream 9863 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 143755 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 143800 23792797 ~ 23795150 (+) False LOC110514613
TU270431 other upstream 143800 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other upstream 143873 23792797 ~ 23795077 (+) True LOC110514613
TU270587 other downstream 113894 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 807980 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 824241 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 833854 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 1253862 25195287 ~ 25199234 (+) True G238540

Expression Profile