RNA id: XM_021593992.2


Basic Information

Item Value
RNA id XM_021593992.2
length 1855
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110514781
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23946808 ~ 23950487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTTTATATAACGACGATGAGAAGTGTTTGTAGCTCTTCCTCACAACGTTGTATATCACAACACGAAATCTGAACCGGAAGTAGTCGACTGTTTGGCTGTTAAGGAAGTCGGAGCATGGTGCTATGTTTATAGGTATCACAATACTGCTTCCATTGATGTCATGATAATTGGGTCAGAATGACATTTGATTAAAGCAAATATTTGAACCTAAATTTGCACAGCAGTGAATGCCTTTATGTCCTGTTGAAGGGAGAGGGACGTAAACAGTTTTAGTCCAAGAACAAACCCAGCCCCAGTTGAGGAAGATTCCCCTCCAAGATGTCTGACATTATGTTAAACCTGGACTGTTCAGGCAGCAGTGGACCCTGTAAGGACACATCGGGAAGCAACAAACACAAGGCATTCATCAACAGGCGGCAACTCTTGGAGAAAAAGGGTTACCTCAACAAAAAGCAGAACCAGCACAATCACAGACAGGGGAATAAACATCAGGGCCCACCTCACTGGCACAATGGGGCCAATCGGCCGTCTCAACCCAATGCTGCACACAACAAAAGCATTGCTCACACGCAGAATACTCACAGTAAAAGTTCATATCACATACCCAGGTCAGATCATGCTAGAAGCGTTGCTTCCAAGCCTGCATCATCCACAAGCAGCTCAACATCCTTGACCATAACTGTGGAGAATTCCACCAATCCTGAGCAATCCACTTCGACTATCACCCCGGGGCACCAACCCCCACCCACCAGGACTGTTGCCCGCTATGCCTCTGTCCCAAGTGGGTCGGCCCCCCTTTGTAACCCACTGAAGTACCTTGCCTTGGACTGTGAGATGGTCGGCACGGGCCCCAAGGGTCGCAACAGTGAGCTGGCACGATGCAGTATTGTTTCCTATGACGGAGACGTGGTGTATGACAGGTACATCAAGCCCACCAACGCAGTCACTGACTACCGGACTCGTTGGAGTGGCATCTCCTGGCATCAATTGGTCAAAGCCATGCCATTTCAACATGCCAGGAAGGAGATACTGAAGATCCTTGCAGGCAAGGTGGTGATAGGGCATGCTGTCCACAATGACTTCAAGTCCCTGAGTTACAGTCACCCTGCTGTCTTAACGCGGGACACATCCCGCATTCCTCTCCTCAACCAGAAGGCTGGCTTTCCAGAGAAAGATGTTGCCTCACTGAAAAGACTCACCAAGGCCCTGTTCAACCGCAACATCCAGACTGGGAAGAAGGGGCACTCGTCCGTGGAGGACGCCAAAGCCACCATGGAACTGTACAAAGTTGTGGAGGTGGAGTGGGAGAGGACCTTAGCCTCCAAATAGAAAAAAAGTCAGTGAAAGACAGTATGGACTGAACTGGTGAAGGAGTTGAGTGATGGTATGGACGTATCATGTTTAACATAATTTTAACATTCAGAAATCACTATCAGGTCTTCCACTTCTCACCTCAGCCACGTCTGTCTCTTTTTCTACTTCTGTAAAAAAACAGTTGCCTTCAGGGTTGCAGTTGTTTATTTTATGGTGGATGACCTATGGCACAAGATGGCAGTCCTCTGCCACAAGGTTGCAGTCTATTTTCTTGGTTTTTATTAATTAATTCCTAATACAGTACTGTGATGTTTTTTTGCTTTGAATTGTCTAGAGTTATTTGTTCAGACATTTCTATTTTATATATTCAATTGTTAACATACAGTAAGTATCTCAGTACCTCATGTACATGTTCATTTTGCCGGGTGAAAGTAAAATTGATTTTAATACAACTGCAGTATAATGAAGAAATTGGTTTTAAACAATTATTGTAATGGCAAACATGGCAAAAAAAGAAATAAATGACAATTTCAAACTT

Function

GO: NA

KEGG:

id description
K18329 ISG20L2; interferon-stimulated 20 kDa exonuclease-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270538 lncRNA upstream 1023 23945546 ~ 23945785 (+) True G236707
TU270505 lncRNA upstream 12365 23933936 ~ 23934443 (+) True G236687
TU270504 lncRNA upstream 12975 23933288 ~ 23933833 (+) True G236686
TU270502 lncRNA upstream 13645 23932309 ~ 23933163 (+) True G236684
TU270471 lncRNA upstream 39475 23893598 ~ 23907333 (+) True LOC110514755
TU270577 lncRNA downstream 81148 24031635 ~ 24031848 (+) True G236743
TU270586 lncRNA downstream 102405 24052892 ~ 24053123 (+) True G236752
TU270597 lncRNA downstream 115477 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA downstream 115477 24065964 ~ 24068498 (+) True G236762
TU270635 lncRNA downstream 151653 24102140 ~ 24102355 (+) True G236798
XM_021594000.2 mRNA upstream 5383 23938950 ~ 23941425 (+) False LOC110514794
XM_021593997.2 mRNA upstream 5383 23940603 ~ 23941425 (+) True LOC110514794
XM_021593972.2 mRNA upstream 14601 23908888 ~ 23932207 (+) False LOC110514733
XM_021593974.2 mRNA upstream 14601 23928327 ~ 23932207 (+) False LOC110514733
XM_021593980.2 mRNA upstream 39463 23891885 ~ 23907345 (+) False LOC110514755
XM_036972687.1 mRNA downstream 6615 23957102 ~ 23975804 (+) False LOC110503942
XM_036972694.1 mRNA downstream 6615 23957102 ~ 23975804 (+) True LOC110503942
NM_001124662.1 mRNA downstream 69264 24019751 ~ 24029429 (+) True rhgb
XM_036972730.1 mRNA downstream 155029 24105516 ~ 24184256 (+) False LOC110503950
XM_036972719.1 mRNA downstream 155030 24105517 ~ 24184256 (+) False LOC110503950
TU270506 other upstream 17721 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 151613 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 151658 23792797 ~ 23795150 (+) False LOC110514613
TU270587 other downstream 104832 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 798918 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 815179 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 824792 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 1244800 25195287 ~ 25199234 (+) True G238540

Expression Profile