RNA id: XM_036972687.1


Basic Information

Item Value
RNA id XM_036972687.1
length 6838
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110503942
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23957102 ~ 23975804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCCCCCCAATCCCTCTTTACTTTGCTTCCTTCGCTGGCGGACGGAGCTCAAGTCGTTCTTTAGCTTTTTCAATTCAACTTAGGGAATCCTCGTACCTGACAACCCATTGTCTAATTTCAGTCAAATTTGGTGGAAAAATAATTATTAGAAGTTGCACTTGTCGAGTCTGCTTCAAAATACAGAGGTCCGCAGAAAGGATACTTTGAGAGGGTCGTTTAAATGAGATTGGAGATGCTCCTGTCTTTGCTGCTGTGTGCCATCTGTCCGCTCGCCCTACCGTCCTCCTCTACCCCCAGCCAAGCCTCAGATGACTCCAGACTCCTACAGGTGACCATCCCTACGACCCCTGTCTTATCTGCCGTCTTGGGGGGCTCTCTTACCCTACCTTGCCTGGTGTCTCTGTCTTACCCGCCCCCCAACACGAATGGCCGCCACGCCGTACTCTCCCTACCCAGGGTCAAGTGGAGTGTGCTGTCCCAGGGACACGAGACTGAGATCCTGGTGGCCCGAGGGGACAGGGTGAAGGTCAGCGAGGACTACAAGGACCGAGCCTCCCTGCTCCATTACGTCTCCTCCCCAGCCGACCTCACCCTGAGGCTGGAGGGCCTGCAGTACAACGACTCTGGCTTCTACCGCTGTGAGGTGCAGCAGGGCCTGGAGGATGCCGACGATGTGGCTCAGGTCAAGGTCAAAGGGGTGGTGTTCCACTACCGGGATGCTTCCAGTCGCTATGCCTTTACCTTTGCGCAGGCCCAGGACGCCTGTGAAGAGATCGGGGCTCACATCGCCACCCCAGAGCAGCTCTTGGCAGCCTACCACAGTGGCTATGAGCAGTGTGATGCGGGCTGGCTCTCAGACCACTCAGTGAGATATCCCATCCAGATGCCACGAGAGGGGTGTTTTGGAGACATGGACGGGCATCCTGGAGTGAGGAACTATGGGCTGCTGGAACATGATGAGCTGTACGATGTATACTGTTATGTGGAGAATATAGAGGGGGAAGTGTTCCATGGCTCTTCCCCTCGAAGTTTCACCCTGTGGGAAGCTAAGGCCTATTGTCTGGCTCAGGGAGCGGAGCTGGCTACCACAGGTCAGCTGTATGCAGCCTGGAATGACGGACTGAACGCCTGCAGCCCGGGGTGGTTGGCTGATGGGAGTGTACGCTACCCCATTGTCACTCCCAGGGAGCGTTGTGGCGGAGGGGAGCCTGGGGTCAGGACTGTCTATCGCCATTTGAACCAGACAGGCTTTCCAGAGGCACACACTCGCCACGACACTTACTGCTTCCGAGGCAACAGCAACACTCACACCGAATCTCCCCATGATTACCTGGCTACAGAGCCAGAGGACATCGGCCAGGACATTGTGACGCTGTCTGAGCCTCTGGAGGAATTCAGCCTGGGTCAGGTGACAGAGCAGGTGGTGAGCAAAGAAGCTCAGGGCTCCCTGTCTGCCATCCTTGTTCCAAAGGAGCAGCACGCATCAGTGCATATAGAGGAGCAAGGGGCTGTCCCTGGGGAGCAGTACCCAGAGAAGAGGGCTGTCCCTGGGGAGCAGTACCCAGAGCAGAGGGCTGTCCCTGGAGAGCAGTACCCAGAGCAGAGGGCTGTCCCTGGGGAGCTGTACCCAGAGCAGAGGGCTGTCCCTGGGGAGCAGTACCCAGAGCACAGGGCTGTCCCTGGAGAGCAGTACCCAGAGCAGGGGGCTGTCCCTGGGGAGCAGTACCCAGAGCAGGTGGCTgtccctagggagcagtacccaGAGCAGGTGGCTGTCCCTGGGGAGCACGGAGAAGAACAGGGGTTTGTTCCTGGAGAACACGGAGCGGAGCAGGGGGCTGTTACTGAGGAGGCATACAccaaggaggatggagaggagcaAGGGGCTGTGCCTGGGCAGCACGGAGAGGAACTGGGGGTTGTTCCTGGGGAGCAGTACCCAGACCAGcctggagaggagcagggggccGTCGATGGCCAGGACCCTACTGTAGTCTATCACGAGGAGCTACCCTTTCCGATTGAACCCCAAGACCCATTCACCCCCACATCCTTCCCCCAAGACCTGGAGCCCACAGAGGACACCTGGCAGCCGGTGAAAGATGTCAGCAACCCAGAAACATATCAGCCTGCCCCTGAGGGGGCAAATGTAGACTTAAACTACCCAGTCACACCGTATGATGAGCTGAACGCAAACCCAACACTGTATCCACCTTCTCGCGAGACAAATTATGACTCAGGTGATCTTACAACTGCTCATAAAGACAACATTAGTAGCCCCGATCCCTACCAGCCCTTGTCAGAGTCAAACGTGGAATCAGGAGAGCTCTCAATAGAGGGTGTTCCAGGGACTGCTCTGGAGGCCCCCGTGCCCACCACAGGGTATGAGGAGGTGGACAGGTCCAGTGATCCACAGCCCATGCCTGGCACAACCCCTGAGAGTGGTGAGTCTCAGTATGGTATTTCAGAGGACAGCCATCTGCAAACAGGGATCACCCAGGAGACCGAACACTACACTTTTACCTCTGAGACCGCAGGCTACAATGTATCAGGAGTTGAAGCCACTACTAGTCATGACAGCTCTCCAGAGGAGCAACTGGAAAGTGGGCTGCCCACACCTCCTGAGGAGGACCACTCCGGAGATGAGCATGTCATCCAGGAGCATGTCACAGACACAGACTCGGTCTACCCAAGCACCTCTTACGACCTCTCAGGAGGGTCCATCAGGCCTGAGGGAGCCATCGCTGCAGGTGTTGAGGAGACATCTGTATCTTCCACTTCACCTCACGAGGAAACGGAGCTCTTCCCTGACCAGTCCACCACTCAGCCTCCATACTGGGAGAACACACCTGAATACCGGCGTACCAACTCTGTGGACCACAGTGCCAGTGTCCTTCTCCCTGAGGAGCATACCACATCACTGGACTCATTGGTCCTCCAGACAGGGGAGAACAGTGGCTCTGCTACTGCTGAGTCAGGAGACCTGGCTACCCTAAGCCCAGTGGAGATGGACCCCTATGAACTGACCTCTGAatatgCTTTTGACCCCACTCAGGAGCAGTCTGGTGTCACGTCACCCGACTCCTCTACCCTAGATGAGCATGTGGAGCAGGAGGCAGGAGGCACAGTGGACTCATTACCAGAGGTTTCCATGGGCTCCACTGACCTGGGTTCAGTTCCAACTGACAAAGTCCTCACAGTTACTTATGACACTGGCTCTAGTGAAGCCTCTGGGATCCACGAGGGAATGCTTGACGTTACCCTCTTGACATCCCCCAAACCTATTACCTATTCCCCCCTGACCCAGCAATCCGTGGAAGCAGAGGCTAGCTCCCCAGGTGACTTCATAACCTTCATCCCAGAATCCAGCGTTCCATCTGGGTTTAATCCCCTGGAGGAAGGGCTGGAGAAGGTGGAGCAAGAGGGGTTGGGTGAAATCCCAGAAGTAGTCGAAACTACTACCCCAGAGACAGCTTTTGgtgaggaggggagtggagatgaGCAGAATGGTCAGGAggtgagtggagaagaggagagtggtcAGGAGGTGAGTGGAGACGAGAAGAGTGGTCAGGAGGTGAGTGGAGACAAGGAGAGTGGTCAGGAGGTGAGTGGAGATGAGGAGAGTGGTCAGGAGGTGAGTGGAGACGAGAAGAGTGGTCAGGAGGTGAGTGGAGATGAGGAGAATGGTCAGGAGGTGAGTGGAGATGAGAAGAATGGTCAGGAGGTGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGACGAGCAGAGTGGTCATGAGGTGAGTGGAGATGAGGAGAGTGGTCAGGAGGTGAGTGGAGACGAGAAGAGTGGtcaggaggggagtggagacgaGAAGAGTGGTCAGGAGGCGAGTGGAGACGAGGAGAGTGGTCAGGAGGTGAGTGGAGACGAGGAGAGTGGTCAGGAGGTGAGTGGAGATGAGGAGAGTGGTCAGGAGGTGAGTGGAGACGAGAAGAGTGGTCAGGAGGTGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGATGAGGAGAGTGGTCAGGAGGTGAGTGGAGATGAGGAGAATGGTCAGGAGGTGAGTGGAGACGAGAAGAGTGGTCAGGAGGTGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGATGAGGAGAGTGGTCAGGAGGCGAGTGGAGATGAGGAGAGTGGTCAGGAGGCGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGACGAGGAGAGTGGTCAGGAGGTGAGTGGAGATGAGGACAGTGACCAGGAGGTGAGTGGCCAAGAGGGAGTAGAGTCCGGCTCAGGCTTAGGATCAGGCGAGGAGCACTCTGCATCTGCTGAATCTGGAGAAAGCTCACGGATCCTTGAACCAGAGGTCCCATACATGAATGAAACTGTCACTCCCATCAATGGCACAACTGTCAATAGCACAGATGAAAGCGAGCCTGAGTCGAGCACAGATGCGCCCTCTACTGACATGGAGATCACGCTGCTCCCTGATTTGTACCAGACCCCCGTGCCCTCCCCCACCGTACCCCAGGAGTCCCGGGCCGATGCAGATCTGGAGTACAGTGGGGAGACCTCAGTCACGGAGGACCCTGACTCCATCACTCCACCCACTGAGGAGCCTGAAGAGACCCCCAGCCCGACGCCCACCACAGAGGACTACGATGACCAGACTACGACGGCAGCACCCCTATATCCAGAGGACGTTGATGAGGAGAAACTgattaccacttctactactccAAGATTTGGGAACATTTCAGATGCCTGCCTAGATAATCCTTGTTCCAACGGGGGAACATGTGTGGACAGTGGGTCTTCAACCAAGTGCCTTTGCTTGCCCACCTATGGAGGAGACATGTGCCAGACAGACCTGGAGGTGTGTGAGCCGGGTTGGGAAAAGTTCATGGGCTTCTGTTACCAACATTTCACCAAGCGCCAGGGCTGGGAGGTGGCAGAGCAGCACTGTCGTTTGTGTGGCGGTCACCTGATCTCGGTCATGACCCCTGAGGAACAGGACTACATTAATGATAAGTACAGAGAGTACCAGTGGACGGGACTGAATGACAGGACCATAGAGGGAGACTTCCGCTGGTCTGACGGGAATCCTCTGTTGTATGAGAACTGGTACCGGGGCCAGCCGGACAGTTACTTCCTGTCTGGAGAGGACTGTGTGGTGATGGTATGGCATGACGGGGGGCGCTGGAGCGATGTGCCCTGTAACTACCACCTCTCCTACACCTGCAAGAAGGGCACCTCTTTCTGTGGCCATCCCCCCATCATTGCCAATGCCAAGGTGTTTGGTAAGTCGCATCTGCGCTACGAGACCAACTCCAAAGTGCGCTACTACTGTGAAGAAGGATTCCTCCAGACACAGAACCCCGTCATTAAGTGCCTATCCAACGGCCAATGGGAGGAGGCTTTGATCAACTGTCACCCTGCCCTGACCAACTTGGCAGAGCGAGAGCAGAAGGTCACAATGCCACCCTATCAGAATGagggggtggaggtggtggaCACAGCCACGGAGAAAGCCACTTCAGGGTTCTGGGACATCAAGTGGAACTAATAAGCTCATCAAACTCAATATGCCCCTTCCCCTTCCCTGGTATCCTATGTTCCACTCAAAGACTGTCCAACCTTGTCCCTCCAACAAGGTGGAGCCTTGTAAAATAAATGTTCTCCCTGAGAACGAGTCATCACATTCCTGTCACCAGCGCTTTCCAGAATAAACCCATTTAAAACATCAACAGACTTGATGTTACTCGGACCTAGTGCCGATCGATCACACTTACAATAAGAGTACATCCCAACATAAGGCCACGATTAGAGGGAATGGATCAAATTTGCACAGTACAGTTTGTCATTGGAATGAGCTTTAACGAAGATGTCCCATCCATCATTGGGCTTGTTTGTTGTATAAGGATGTGTGATTGTTGACTAGTGAAATTCTTTGATATCCATCTGTGCTACGACACTGTTGTATTACTGTATTTGACTGAGTAACATATATTATGACATGTTTATGAGGGTGTACAGTAAGATTTTGATGGAGAGTTTCAGTAAAGTGCAACCTAAATCTCAACCTCAGCTGGTCTGACATTAACCGAAGCCACTTTCCCACCCTCTGCCACAAAAACAGAATTAAGATGTCCACTTCCGTATGCTATTGTATAAGAAAATCTCCTTGTCAATCCATATCTTCTCAATTCCTACAACACAAAGCATTTTCTCCACATGTCCTCTTATCTGGTGTTTTGTTTTATCAGGTGTCTTACGAACTTTGGACCCAATATTAGAAGCCAATTTCCACTTTTAAAGTACTTGGCTTGAAAATAGCCAGAATCCAAAGTTTGTTTTTTTATACTCTCGTAAAAACGTAATCACTAAGATACTAGGAAGAACATGTGAAAATGTCCACAATGGTATTTCCGTTTTCATGCACCAATGATGTCATTGTCTTAGTTCCAGTGGAAGTAATACTGTACGTTGGTAGTGTTTAACTTAACAGTAATCAAATAATGCTAATTATAAATCCCATTTGTGACTGCACAATTGCATATTGAACTTGTTATGAAAGAAAACATTTAATTGTACAACTAATTAAAAAGGAGATGGATTAAATGAAAAtaagaaaaatatagtttttggAGAGTAGAAAATAAATATCTAATAAAATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270538 lncRNA upstream 11317 23945546 ~ 23945785 (+) True G236707
TU270505 lncRNA upstream 22659 23933936 ~ 23934443 (+) True G236687
TU270504 lncRNA upstream 23269 23933288 ~ 23933833 (+) True G236686
TU270502 lncRNA upstream 23939 23932309 ~ 23933163 (+) True G236684
TU270471 lncRNA upstream 49769 23893598 ~ 23907333 (+) True LOC110514755
TU270577 lncRNA downstream 55831 24031635 ~ 24031848 (+) True G236743
TU270586 lncRNA downstream 77088 24052892 ~ 24053123 (+) True G236752
TU270597 lncRNA downstream 90160 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA downstream 90160 24065964 ~ 24068498 (+) True G236762
TU270635 lncRNA downstream 126336 24102140 ~ 24102355 (+) True G236798
XM_021593992.2 mRNA upstream 6615 23946808 ~ 23950487 (+) True LOC110514781
XM_021594000.2 mRNA upstream 15677 23938950 ~ 23941425 (+) False LOC110514794
XM_021593997.2 mRNA upstream 15677 23940603 ~ 23941425 (+) True LOC110514794
XM_021593972.2 mRNA upstream 24895 23908888 ~ 23932207 (+) False LOC110514733
XM_021593974.2 mRNA upstream 24895 23928327 ~ 23932207 (+) False LOC110514733
NM_001124662.1 mRNA downstream 43947 24019751 ~ 24029429 (+) True rhgb
XM_036972730.1 mRNA downstream 129712 24105516 ~ 24184256 (+) False LOC110503950
XM_036972719.1 mRNA downstream 129713 24105517 ~ 24184256 (+) False LOC110503950
XM_036972757.1 mRNA downstream 129713 24105517 ~ 24184256 (+) False LOC110503950
XM_036972767.1 mRNA downstream 129713 24105517 ~ 24184256 (+) False LOC110503950
TU270506 other upstream 28015 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 161907 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 161952 23792797 ~ 23795150 (+) False LOC110514613
TU270587 other downstream 79515 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 773601 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 789862 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 799475 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 1219483 25195287 ~ 25199234 (+) True G238540

Expression Profile