RNA id: XM_021594003.2


Basic Information

Item Value
RNA id XM_021594003.2
length 1914
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110514815
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23975874 ~ 23980300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCATTAACATCTGGAGcagaacagagaacaacccaGTTTACACTGGCCACCACGGCCTGAGACATAAGAGCactggtctgagagagagagagagagtcaagagaaggagagagagatatagtcaagggaaggagagagagagagagagagagagaccttgggGGTCAAAGGGAGAAGAGATCACAGTGGCAGAAATGGGCCTCAGAGAAAAATAAAGAAGATATTTTTGCTTCCGAACTATCCCACTAACGGAAAACGGTCATGTTTGACTGAACAACCCTCAAAGGTGATCAGTCACCGTTGTTTTGAAGAGAAAATCAAGCCTCATCTCATCAACTGCTGCAGGGACAGGGAGGGGGACTTGCTTCATTATGAACTGTGCTGCTATTTTGATACTAACCGCAAGTTGTTTCAGTTGGACGTCTACTATTTATCTGCCAAACAAACAAGAAACAAAGAAACTGAAGTATCTGCTTGAGCCTCCTGTTTATGCTGAAGTAACCAGCCCTCGGGGAGGAAATGCCACTTTGCCATGTGTACTGCGATTCAAACCAAGCCATTACAAGGTGAAATGGACAAAACTGGAACCACTTCGTCGTGGAAGCGAGAACATTGTCATGATCACTAACGGTTCAGCCCACAAACCCTATGGCCTGCTTGGGCCACGGGCCTCGCTTCGTAAGGCTCATGCCATGGATGCCTCACTACAACTCAGCAACTTGGAACTAGAAGACGATGGTAGATATCGCTGTGAGCTGATCAACGGTATTGAGGATGAGAGCGTCATCATTACATTGAGGATAGAAGGGATGGTGTTTCCATATCAGAGCAAAAATGGCCGTTACAAATTCACCTACAAGGAAGCTAAGGAGGCCTGTGCTGAACAGGATGGCACATTGGCCACATTCAAGCAGCTATACAGAGCCTGGACAGAGGGTCTGGATTGGTGCAACGCGGGATGGCTCATCGATGGGACAGTCCACTACCCCATCCTGCACCCACGAGCAGAATGTGGGGGGGAGCTGCTACCTGGCATTCGCAGCTATGGCCCCCGGGACAGGATCCGGGACCACTTTGATGCCTTCTGTTTCACCTCTAGAACCACAGgCTTTGTGTTCTTCGTTGGACAGCCACTCACATTTGGGGAGGCAATGCAGGCATGTAGGGGTGAGGGAGCAGAGTTAGCTCTTGTTGGACAGCTCTATTCGGCCTGGCGTTTCCTGAGCTATGACCGCTGTGATGGAGGTTGGTTGAAGGACGGCAGTGTGCGTTTCCCTATCACCACCCCTAGAGAGCACTGTGGCGGTATTCCCGAGGCTGGGGTGCGCACCTTTGGGTACCCCAACAAGACCCTGCGTCTCTATGGTGCCTACTGCTACAGGTAGCTTTCATGAGACCCATAGCGTGTGGAGCCTACTTCCACTGACTTCATAGATCCAAGATGCAGAACCATTGTGAAGATTACCAGTGACCCCTACAGGTTTCAGTACGTAGGGCTTGCAGATACAGGTAGTCAAAAGGCTAGGAACTGGTTCCTCAACAACGGCAAAAAGATACAAGTAGCACTGCGCTTTTCTGCAATACTACAATATGTTATTACAGGAAACCTCGAAGGCTTAATGCCTTTTTCCATGGGACACATCAACAAAAGCCTGCCACTTTTATGAGCTTTACTGCTACAGGTAACAACTGCTGTACATGTTTTCCTGCGCTTGTGTAACATTTGTTTTGTGAACTTTGTTATCCAAGAAGCATTATTCTAGTGTAACAGGATAGTTATTACACAATGACAAATTCCTAAAATGCTACTGTTAGCTTCTTAGCTGATGTAAGAGAGTGTGTAAATAGCAGATTGGGAGAAAGTATACACACTGAGCAAAACTGTAATACAATAAAATATCTTTACAGTGTA

Function

GO: NA

KEGG:

id description
K06851 HAPLN2; hyaluronan and proteoglycan link protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271429 lncRNA downstream 8167 23965964 ~ 23967707 (-) True G237522
TU271412 lncRNA downstream 37356 23937601 ~ 23938518 (-) True G237510
TU271414 lncRNA downstream 41046 23934003 ~ 23934828 (-) True G237512
TU271338 lncRNA downstream 68529 23905374 ~ 23907345 (-) True G237442
TU271379 lncRNA downstream 82340 23893301 ~ 23893534 (-) True G237479
TU271472 lncRNA upstream 65163 24045463 ~ 24045671 (-) True G237563
TU271476 lncRNA upstream 78044 24058344 ~ 24058612 (-) True G237567
TU271502 lncRNA upstream 120924 24101224 ~ 24101468 (-) True G237593
TU271503 lncRNA upstream 121552 24101852 ~ 24102101 (-) True G237594
TU271585 lncRNA upstream 219348 24199648 ~ 24199944 (-) True G237663
XM_021593963.2 mRNA downstream 125950 23841341 ~ 23849924 (-) True LOC110514697
XM_036972601.1 mRNA downstream 127074 23841341 ~ 23848800 (-) False LOC110514697
XM_021593956.2 mRNA downstream 135362 23832402 ~ 23840512 (-) True LOC100136261
XM_021593917.2 mRNA downstream 195716 23771511 ~ 23780158 (-) False LOC110514600
XM_021593909.2 mRNA downstream 204998 23768099 ~ 23770876 (-) True LOC110514588
XR_005041888.1 mRNA upstream 87630 24067930 ~ 24078853 (-) True LOC118947709
XM_021594009.2 mRNA upstream 208909 24189209 ~ 24198813 (-) False LOC110514831
XM_036972836.1 mRNA upstream 208909 24189209 ~ 24198813 (-) False LOC110514831
XM_036972840.1 mRNA upstream 208909 24189209 ~ 24198813 (-) True LOC110514831
XM_021594018.2 mRNA upstream 237205 24217505 ~ 24221711 (-) False gpatch4
TU271267 other downstream 195739 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 786843 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1400885 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 2220373 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 2232463 21738845 ~ 21743411 (-) True G235092
TU271572 other upstream 200256 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 200256 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 540919 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 789262 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 789404 24769704 ~ 24770323 (-) True LOC110515154

Expression Profile