RNA id: XR_005041888.1


Basic Information

Item Value
RNA id XR_005041888.1
length 981
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118947709
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24067930 ~ 24078853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACCGAAAGTAACAAGAATCCCATTACGCTCCTGAAAGGCACCAAGATCCCCAACACATATCCCAAATGCTGCACCACCCCATTCTACCAATCACAGCAAAACAAGCAACGAAAATGGCCGACATCATAGGACACGGAAGCAGAAGAAAAAGTCAAACTACCAACACCACCATGACAGAATGCTGGCAAAATGAGGCTGaaaaacagggagaggaggagaggttgcTGTTGACTCTGACTCCCTCTCCTCCAtatcttctctccccttctcccctccctcgctTCATCCTCAGCTGCCTTCCCCATTCTCCTGTACCGTGAGACGCAGCCCACGCCACCATCTTAGGACGACGCTCGCTGGCATGAAATGGAAGTGAGGACCAGAGAGAGCAGGCAAATAATGGTCCAGAACACTGGAAGAGGGCAGAAATGACAGCGAGCAGTAATCCATTGGGAGAAGAGAAGTTGCCCACAAACTACCAACCCATCCCTAGTATTTGCAATGGAACAGGCCCATTACAACAATGTTTGTCCACTACACTCCGACTTGTGCCACAACATTTGAGCATCAGAGCACTTTAGCTGCCTCTGACATGTGGTTGGACCTCTGGCCTGAGTTTAGTTATCCAACAAGGGCCAATCAGGATTGGTTTTCTTTCCTTTCATTAAGCCAATAATAAAGTGGGGTGGTGGcatggaaaacaagagcaaatatCTCAGGATCCAAGATGAACAGAGAAGCACTGATTCTTGGATACACTGTGCTATGAATGAGAAACATGACATGTGCTGTGTACCTACAGTATTTGCTTGCAGCCTCAATAACATCTACACTGAGTGTCCAAAACTTtaagaacatctgctctttccatgacatagactgaccaggtgaatccaggtgaaagctatgatcccttaatgatgtcacttgttaaatccacttcaatcagtgtagatgaaggggaggagacaggttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271476 lncRNA downstream 9318 24058344 ~ 24058612 (-) True G237567
TU271472 lncRNA downstream 22259 24045463 ~ 24045671 (-) True G237563
TU271429 lncRNA downstream 100223 23965964 ~ 23967707 (-) True G237522
TU271412 lncRNA downstream 129412 23937601 ~ 23938518 (-) True G237510
TU271414 lncRNA downstream 133102 23934003 ~ 23934828 (-) True G237512
TU271502 lncRNA upstream 22371 24101224 ~ 24101468 (-) True G237593
TU271503 lncRNA upstream 22999 24101852 ~ 24102101 (-) True G237594
TU271585 lncRNA upstream 120795 24199648 ~ 24199944 (-) True G237663
TU271624 lncRNA upstream 177032 24255885 ~ 24256465 (-) True G237701
TU271626 lncRNA upstream 205346 24284199 ~ 24284429 (-) True G237703
XM_021594003.2 mRNA downstream 87630 23975874 ~ 23980300 (-) True LOC110514815
XM_021593963.2 mRNA downstream 218006 23841341 ~ 23849924 (-) True LOC110514697
XM_036972601.1 mRNA downstream 219130 23841341 ~ 23848800 (-) False LOC110514697
XM_021593956.2 mRNA downstream 227418 23832402 ~ 23840512 (-) True LOC100136261
XM_021593917.2 mRNA downstream 287772 23771511 ~ 23780158 (-) False LOC110514600
XM_021594009.2 mRNA upstream 110356 24189209 ~ 24198813 (-) False LOC110514831
XM_036972836.1 mRNA upstream 110356 24189209 ~ 24198813 (-) False LOC110514831
XM_036972840.1 mRNA upstream 110356 24189209 ~ 24198813 (-) True LOC110514831
XM_021594018.2 mRNA upstream 138652 24217505 ~ 24221711 (-) False gpatch4
XM_021594020.2 mRNA upstream 138652 24217505 ~ 24221727 (-) True gpatch4
TU271267 other downstream 287795 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 878899 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1492941 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 2312429 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 2324519 21738845 ~ 21743411 (-) True G235092
TU271572 other upstream 101703 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 101703 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 442366 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 690709 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 690851 24769704 ~ 24770323 (-) True LOC110515154

Expression Profile