RNA id: XM_036972785.1


Basic Information

Item Value
RNA id XM_036972785.1
length 5498
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110503950
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24105516 ~ 24184256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGGTCCGGCTAGTGTCAATCATGAAGCAGTGCCAATCATGATAGATTGGGCAGCAGCAGCTACATTGTATCGTTTGACAGAACTAAATAGTTACCTTGTACTTCAAGAggaatgatttaaaaaaaatatctactGACGTCGGTAGACAGCCTGTTTACATAATTTTTATTCCTCAATCAACATTTTAAATACATAGTCATATATTTTTGAATCTCCAGTTTCACCAGACAGATGTGGATACAGTTCTACAGGGAGTAACACACCTGCAGTAAAGAGGGGAAGAGGATCCTAATTTATAGGACCAGTGGATGACCTGCCTGCTGTACAGACCATGATCTGAAGGCCCCGCCACGTGGTCCCATTCTTCTTCCTTATTTCCTGCAGGGGTAAGAGCTCCTAGACCAGCTGCCATAGACAGGTGGagcagagggagatagagagagtgtgtaCGAGAAAGAGTGCGACAGCCAAGCGCCTAGTCGGCAACAGTGCCCACCAACCACCTCCACAGGACAGCCGTGCCCTCCGACCCCACCACGCCCCCTGCCCCTCCCACCGCCAGACCGGAACCATGGGAAGGAAAAAGATCCAAATACAGAGGATCACAGACGAACggaacagacagGTGACGTTCACCAAGAGGAAGTTTGGTCTGATGAAGAAGGCGTACGAGCTGAGTGTGCTGTGCGACTGTGAGATCGCCCTCATCATCTTCAACCACTCCAACAAGCTGTTCCAGTACGCCAGCACCGACATGGACAAGGTCCTGCTCAAATACACCGAGTACAACGAGCCCCACGAGAGCCGTACCAACGTCGACATCATGGAGGCTCTGAACAAGAAAGAGCACCGGGACTCAGAGAGCCCAGACCCCGAGGAGCCCTTCTCCCTCACCCCCCACACTGAggagaaatacaaaaaaattgaCGAGGAGTTTGATAAAATGATGCAGAGCTATAGGCTGTCATCAGCCGTCCCACAGCCCACCTTCTCCATGCCCGTCACGGTGCCAGTGTCCAATCAGAACGCTCTCCAGTTCAGTAACTCTGGTGGCCTGGTCACCACCTCCTTCGTCACCTCCACCCTCACAGACCCCCGCCTGCTGTCGCCACAGCAACCATCTCTCCAGAGGAACACTGGGTCTCCAGGGTTACCACAGCGACCGGCCAGCGCAGGTGCTCTATTAGGAGGTGAACTGAACAACTCCAATGGAGGATGCCCGAGCCCAGTTCCGAACGGCTACATCAGTGCCAGGGCCTCCCCCGGCCTCCTCTCCGTCTCCAACGGCAACAGCCTGGGGAAAGTAGTCCCGGCCAAGTCTCCACCTCCGCCCAGCCCTCAGATGGTGAACAGCCGCAAGCCTGATCTCCGGGTCATCACCTCCCAGAGCGGCAAGAGCCTGATGCAGCTGACCGATGAGGAGCTGGAGTTGGTGAGTGAGAATGCTCAGCGGTTAGGTGGTTCTCAAGGGAATCTGTCCACGCCAGTGGTTTCCGTGGCGACGCCCAGTCTCCTAGCCCCCTTCTCCGCCATGCAGACGACCTACAACACTGaGTACCAGCTGACAAGTGCGGATCTCACTGCGCTCCAGACATTCACGCCATCAGGGCTGCTGCCTAGCAACATGTCCACCTGGCAACAGCAACCAGCAGTGTctcagcagcaacagcagcagcaacaacaacaacagcaacaacaacaacaacaacagattaGCTTGGCGTCACTCAGTAACTTGGTCATGGCCTCTCAATCAAACTTGCTATTTGGCAGGGAAGAGGGTCTctgctgGCCGGTGGGCCACTTACCTCAGGGCACCATGCTGACAATTAACACCAACCCCAACATCAGCATCAAGTCGGAGCCCGTGTCGCCCAACCGTGACCGCAGCACCCCGTGCTCCACAGTCGGGGGTGGCGGAGGAGGAGACCTAGTGACCATCACAGGGGCCCCTATGTCAGGCCAGTACCCAGGGGCCCTGCGCCTGGAGCCGTCCACCCTGCAGGGCCGCTCGCCCGTCGGCAGCTTGAGCAGCAACGGCAGCTCCTACGAGGGGGACCGGGACGATGGGGCCCAGGGGCGGGCCCAGGACTTCCACCACCAGGGAGGGGCCTCCTCGGCCATGGGGCTCCTGAGGCCCTCGTCCACgcaggagcagcaggagcagGAGGGTGCCAATGTGAAGAGAATGAGACTGGACACTTGGGTAACATAGATGTGTAGAACAAGGGAGTGAAGGGGAGagatgcccccctctctctcacacccccccccaccccacacctaTTTACCGTATGTACAGTAAATGCTGACCTCCACACATGCCtccaccacacacaaacacacacacacatgcaccggACACGCCCATTTGCGCATGCTCTTACACACTTTCTCTCACAAATGTATGCATTGACGCACAAGCTGCATACTGTTTTACCCTATattgtactacacacacacacacatattctcacACATGCACCCCCTATAGGGGCAGAGTAACCGAACCAGGGATTACATGTCAACATAGTGTGTTGGACAAGATTAGGATTAGAATGAATGAGTTCTCTTTTGTTCAAGCTGGCTCTGTCTCCTTTTCGTtttgaagggagagagagcgtcTAGAAAACTGACTGACTATTGACTGACTATTGGCTTTGCTGGGTTTTCTGTTTACCCTCTACATCACATAATACACATCTGGTATCCTCCTGTCATTTATCCACAGTAGGTCTCTAGTCCAGCTGCACTGCTCTGTTGAGAAACAGTACGACAACCAAAATGAATCCACTTCTTTGTATCTGCCCAGTGGTACTGTTATATCCAGCTTTTGGTGTTTTTGTAAAGAGTATGAGATTGGTGAATGAGATTTAAACGGTTTTGTTGGAATATtacgtcctctctctgtctgacttgTCCATCAGCCATCTTTACATTTCTATAAACATTTCTAATTTAGATTTAAGAACCCAAAATTCACCAAGTCAAACTTACTAGCTATCCATTTGATAAGACAGGATTCACTGTTCTAAAGTGGACGATCCTTGTTTTGTTTAGTTTTAGCCAGGTATTTAATCAGAATCATGCAAATAGCTGTTTAATCTGAGACATCGATACCTTATCTAGGTCAAATACTGTTTTATCAGGGATGGGCTGCACTAGCTCTATGACACATGCTACAGATACCTACAGATCAACTTCAGATTCTACGTGTGTGTTCCTGTTTTTGATATTTATTTCAAATGCTCTTTTTGTGTAAAGTTTTTTTGTTACTACCTTCTTGACTTTTTTAGATTTTTCCCACGCTCAAATCCATCTGCACTCACACACGaaaagtatttttgttaaacaatGGCAGTGATTCAGAAGGCTCTGAATAAGAGATATAAACTGGGAGAAAAAGCAAAGAACTGTGTATATAAGCAATTTGTTCTGTTTCCTTCTGTATGGCTTTTGTATAGCAGGGATATTGTTTTTTtgtgggtatatatatatatatataacagcagCGATAGTAGATTTTGAGAGTAAGGGATGAACTGCATACCATGCAGAGAAAACGATAGATGACAGGGATTGTATATAGAAATATATGTTCACATATGTTCAGCAGGATATCCCTAAAAGCCAATGTGTTGATTCTCAGTGGATCTGTCGTTCTATTTGTGTGTACATAAGTGTACTACGTTGCAAAGCCAAGTGAGGGTGCTAGAGGGACAGAATGGAAAGTAGCAGTGGATTGGACTATTTGAGTGAGCAGTGGTTAGTACTCTGATGGAGCGCACTTTAACCCCTTCCTTCCCCCCAATCCCCCAAAATGCCCCCTCTTTAAAAGACAGGTGTCCTCCAGAATGGGACAGTCATGTCTGCATGTCCTCAGGTACATCAAACtcatccaacacacacatacaaacacattcacacacattagcCAGACAAGTATCCCTTGTGCTTTATGTTAGACGAGAGTTCCTCCCTGGCCACATTAATTAATTACAGCATTTCACTCGCTCCCTACCCGTGACTTAAAAGACAAGTCCATCTCACTCTCATTTGACCTCCACGACTATCAATTTTCTGCCAAAACGGCTAATTtctccacacactcaaacaccaTACTCACATATACTCTGCACTCTGTTCAAATGACCTCACATTGGCTCTTTATTGTTTTATATCGTTGTAGTTGTTGCTGTAGGGATTGTGCAGCCTGACTCTTCAGGAGTCTAGACGATCGTCTAGAGAcggatggcagagagagagctaTCACGACTGCCGGCATGTTCGCACACCCTTGGACTGTAAGACTGTTGTGTCCTAAGCTTTGAACAAAACATTGACCCtgatggggtttttttttcaTAAAAATGGTAGCTATGTCTTGAATAGGGCCACACGCCATGAAGCGATGTTTCATAACTAGACTAAATGGTCACTAGTGGAAGCAGACTATGGGGAGATGGTTGGTTAGTACTCTGGACATTGGCCAATCGATGTGTTGCATAAAGCCCTGACATTATCTCAGAACAACACTAAGGGTCACTGTAATCACAAATGAAAAGACAATCGTCATGACAATAGTTAACCTGCGCCCCCATATTTCCCATGTATAATGAATGATGTTTAGAGAATCTCACTTTCCAGTGTTAATTTGTGCTGGTGACAGTTCTATTGTCTGTTTTTATTATAATTGTTCTATGGTAATTGCTATTATTACTGTTAATATTATCATTATTGTGACCATCGATGGTAATTGTAATGATGATATAGAAAAGACAATTTTATTTTTTGCGGTTTTGTGTAGGTTAGGAATCTTGTTTTATttgaattttattttattatatataaatattatatttttgttttgttttcattttttGTTTTTTCTTCAAATGGTGTACAAATATTGCACGATTTATGACATAAAACAAAACGGCTGTAGTAATATTAGTACATGTGAGATCATGGAAGGTGGTAAACAAGTTTAATACAATGCTGCAATTTTTAGTCAAATGTATAAAACTTAGTCTACACATAGTAAAGTGGGGACAAGACACATTTAATTTATTTCCGACTAGACACAAAGATGTCAATGCATGGGCATAACACAAAAAAAGGAATGAATCATGTTATAGGAAATAAATATGAAATGTAATATCAATAAGAATTTACATCACACAGAAATAAAATCGAAATTGAAGAAAGAAGTTAATAAATTATAGTTAATATATTGTGTTCGGCTAGTCTGATTtttgttgtaaaaaaaatataaaaaaataaaaaattttgTTGTTTTTGGAGAATGATATACAATTTGTGTATATTTTCATAAATAAAGTATGCACTGATATGTTATTACAAATTCTATACTGCTTTTACAAAAAAAGTGTTTGTTATTGTACCAAAGTATCCATTTGTCCCTTCTTTACCCTCCCCTTTTTACGTATGTTTTATCGTATTTTATATATTAAATAGACAAGTTGACCTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270635 lncRNA upstream 3162 24102140 ~ 24102355 (+) True G236798
TU270597 lncRNA upstream 4659 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA upstream 37019 24065964 ~ 24068498 (+) True G236762
TU270586 lncRNA upstream 52394 24052892 ~ 24053123 (+) True G236752
TU270577 lncRNA upstream 73669 24031635 ~ 24031848 (+) True G236743
TU270619 lncRNA downstream 96 24184352 ~ 24184656 (+) True G236782
TU270683 lncRNA downstream 31125 24215381 ~ 24215807 (+) True G236838
TU270687 lncRNA downstream 38017 24222273 ~ 24222648 (+) True G236842
TU270689 lncRNA downstream 39723 24223979 ~ 24224206 (+) True G236844
TU270614 lncRNA downstream 74827 24259083 ~ 24261294 (+) True LOC110514864
NM_001124662.1 mRNA upstream 76088 24019751 ~ 24029429 (+) True rhgb
XM_036972687.1 mRNA upstream 129713 23957102 ~ 23975804 (+) False LOC110503942
XM_036972694.1 mRNA upstream 129713 23957102 ~ 23975804 (+) True LOC110503942
XM_021593992.2 mRNA upstream 155030 23946808 ~ 23950487 (+) True LOC110514781
XM_021593997.2 mRNA upstream 164092 23940603 ~ 23941425 (+) True LOC110514794
XR_005041909.1 mRNA downstream 20227 24204483 ~ 24207629 (+) True LOC110505138
XM_021594024.2 mRNA downstream 42656 24226912 ~ 24259547 (+) False LOC110514864
XM_036972869.1 mRNA downstream 42656 24226912 ~ 24259547 (+) False LOC110514864
XM_036972877.1 mRNA downstream 42656 24226912 ~ 24259547 (+) False LOC110514864
XM_021594059.2 mRNA downstream 115451 24299707 ~ 24313412 (+) False LOC110514930
TU270587 other upstream 49850 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 176430 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 310322 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 565149 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 581410 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 591023 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 1011031 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1356513 25540769 ~ 25541613 (+) True G239026

Expression Profile