RNA id: XM_036972836.1


Basic Information

Item Value
RNA id XM_036972836.1
length 5989
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110514831
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24189209 ~ 24198813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTATCTCACCAGCGGTCACACTAGAGGAGGCAAGCAGCCTCACAGCACATTCTGACCCTCACACACAGGCTTGGAGAGAGAGACCGAATCAGCACCTCACACACATTGACAGAAACTGCTCGCTCCAGAGCGAGGCCCTCTTTACTCAACCAGCATCactatctgtcctctctctctgacatggaGCTCCACAACAAGCTCCAGATGCTGAACCTCAACCAGCGCCTGGAGACCTACCTGGGCCGAGTGAGGCTGCTGGAGGAGGAGAACAAGCTACTATGCCAGGAGCTCCAGGCCCTGAGGGTCAGTGGCCAGGGGGGGCAGATGGGCCTGGAAGACAAGCTGAGCCTGGCCAGGCAGGAGGTGGAGGAAGCCTGGAGGGAGAAGGACCGGGTGGAGCTGGAGCTAGGGAGTCTGGGTGAGGAGCTCCAAGTCCTGGGGCTGCAGAGACGGTGGGAGGCGGACGCCCATGGGGAGGTGAAGAAGAAGCTGGCATCCAGcaagaaggagatggaggaggagaagagggctCAGATCTGGTTAAGAGAGAAGGTGAGCCAGCTAGAGAAACAAATCCAGTTCCAGATACAAACCCACCAGGAAGATGTTGCTGGCTTCCAGGCTACACTAATCCAAGTCAGACCTGCCCTGCCATCCCCTCCACCCCAAACGGGCACCCAGCTTCCCAGCCTCCAGGACCTGGGTGAGGAGTACTCCCAGATGGCTGTCAGGGCGTGGCATGAGGCGGCCATGGTGTTTCAGGGCCAGGTAGACAGCCTGGACGAGtctctaaaccaggccagaacccGGTTGGCCCAGGTGGGCCAGGAGAAAATTGAGAGCCAGCTGAAACTTCAGGCCCTGGAGAATGAGCTGCAATCAGCCCAGGATAGAAGGCAGTGTCTGGAGAGGAGTGTGGCCAAacagagagacatgcagaggCAAGAGATACAAAACCTGCAGGCCCATCTGGAGGTGTTGGAGATGGAGAAGGGGGCGCTGGGAAATCAGATTGACACTCTTCTGACAGAAAGTAGGGGTCTGGTGCAGCTGAAGATGTCTCTAGGCATGGAGGTGGCCACATACAGAGCTTTACTGGACAATGAAAGTCTGATGGGGGATTTCTCTTCAACAAATCAGCTAAGGAGTACCTACACATCTGATGGAGTCCCCAGCTCTCGAGGGGTTAAGCAAAGCTTCCAGACACAGCTGGCTACCAGTCACATAATCAGTCCCTTCTCTACCATCCATAGAGCAAGCCCACGATCCAATGTAACAACGATGTCCGCATCACCAATCTGGACTCAAAACCAGGTGACCCTGAACGAAACACCTGAGAGTTGtcgaaagacagaggaagagcagGTTGACTTTGACTTAGGGTCCAACCGGCAGGTTATTTGGTCAACGCCTTACCCCAAAGTACCACAGGATGGAATTTCAGTCGACCACTTCAGACCCCAAGATGTCCATGAAGAAGTCAACTATGCTGAGCCTCTCTCACCTCCCACTGAAGAGGCAGGAGCTGATGTTGTATCTTGGCTTGGTTCTGACCATAAGGAACAATCCATGTGGGATTtagaaaaggaggaagaggatcaGAACATAGTCAGAACCTGGGTTGCTAAAGACAAACCAGTTCTGGAACCTGCCATGAGTCACCAGGTTGAGATCAGCTTCAGTATGCCAACTGTGTTCAGCACTGATGCTCAAGAGCTCTACAGCCCTTCAGTGAGCGATGAGAGAGCAGGTTCAGTGACAGGGGCACATTCTGCTTTCTCGGCAAATGATGATAATGATGTACCTTTTGAAATGTCTTCTGAAAAGGAGGAACCTCTACTAGATCTGCCTTACGGTCCCATGAATGCATTGGAGGAAAGAGATCTCGAAACAGCAAGGAAAGACGCTGAATGGGTGGGGAAAGAAGGCTTGGAGTCTGAAATTAAATCAGTGCTAGAACCTGCATTTGAGACCTTCACAAGCAGTCAAGCTTTTGAGTACAACAAGTCAAAAGAGTTCAACCAAGAGGACAATATGTCATATGCATCTACTCAAGCCTCCCACGGTTCAGAAGAGGCATTTCACCATGTTAAAAGAGTGGAGGAAGATGTTATTAATCTCACAAAAGAGGATGATGAAAACTATATGTCTAACAAAGATGAGGAGCAATTGGAAGATGAATTGCGCCCCTATGGGTATGGTAAGGATGATTGTGAAAGATTGGCAGGGTTCAATAAGGAACATTGTGTGACAGAAAGAATCGATAAGTTCAACCGAGAGGCGATTATCTCATATGAATCTGCTCAAGCTTCTCACTGGTCAGAAGAGGTATTTCACCATGTTGAAAGACTGGAGGAAGGTGATATAAATTTCACAAAAGGGGATGATGAAAATGATATGTATAATAAACGTGAGGAACAATATGCATTGCACCCCAATGGGGATGTAGATGATGAATGGAATAGAGTGGGAGGATACAATGAAGAGAATGGAATTAGAGAAAGAATGGATGAAGGAAAGGATCAAGAAGGAAAGGATCATATGAAAGAGGAAGAGATGTGGAATAACAGAGAAACCCAACCAAATCAGTCTGATCAAGAGCATATACCTTCAAATGTAGAGAAACTGAATCAATTTGAGCAAGAGCATATACCTTTAGGCAGAGAGAAACGGAATATATCCGACAATGACAAAGAGGATCATGATGAGGCAAACTACTGTCAAAATACTTATGTTTCATGGAGGGCTGAGCTAGAAGGTGACAGCTACACTCAGGACAACACACTGGCCGACACACACCCCCTGATCCGTTACAAGAGTGACGAGACGGATGCCAACACTCAGGCTTCACACATGGGAGAAAGTGACTCCAGTGATGGTGAACAGGACAGGGAGGTTTGCCAGACAGGATCAGGCACCTGGGGCGAAGGCAAGTCCAAACAGTTTGACACCATGGAGGATCTGTATGAAGAGTCAGAAGGGGATGTCATAGATCAGGAAAGTAACATGGGCTCCACTCACCAAGAGGACATGGATGCTAGCCAAACAAAGGAGCATGCTACACAGGAGAACGATGAGGAGACTGCAGTAGATCAGTTGATTCAGGAGGCAGAAGAGGAACAATCCTATGAGGACCTTACAGAACCTGGAGAGTACTCCATGATGTGCTCTGATGAGGACAATAATGAAGAAAGAATTGATAGATTGGTAGAGCAAGAATTAGAGAATTTATCTATATCCAGTTACAGTGAACACTTTAATGGGCAGATGATTGAGAGCGAGTCAGTACTGAGTCTTCAAATTGGGTCTCACACTGAACTTTCCCAGACACAAGACATATTATACAGTGAGGAGGTAGAGCAGATACACTCAGAGAGACTGAATCAATCTGAACAAGAGCATACGACCTCAGGCGGCGAGGAACTGAATCAATCTGAACAAGAGCATATGACCTCAGGCGGCGAGGAACTGAATCAATCTGAGCAAGACCATATGACCTCAGGCGGCGAGAAACTGAATCAATCTGAGCAAGAGCATACGACTTCAGGCGGCGAGAAACTGAATCAATCTGAGCAAGAGCATACGACTTCAGGCGGCGAGAAACTGAATCAATCTGAGCAAGAGCATACAACTTCAGGCGGCGAGAAACTGAATCAATCTGAGCAAGAGCATACGACTTCAGGCGGCGAGAAACTGAATCAATCTGAACAAGAGCATACGACTTCAGGCGGCGAGAAACTGAATCAATCTGAACAAGAGCATACGACTTCAGGCGGCGAGAAACTGAATCAATCTGAACAAGAGCATACGACTTCAGGCGGCGAGAAACTGAATCAATCCGTGCAAGAATATATACCCTCAGACGGAGAGGAACTGAATCAATCTGAACAAGAGTATATACCCTCAGACGGAGAGGAACTGAATCAATCTGAACAAGAGTATATACCCTCAGACGGAGAGGAACTGAATCAATCTGAACAAGAGTATATACCCTCAGGTGAAGAGGAACTGAATCAATCTGAGCCAGAGTATATACCCTCAGGTGGAGAGGAACTGAATCAATCTGAGCCAGAGTATATACCCTCAGGTGGAGAGGAACTGAATCAATCTGAGCCAGAGTATATACCCTCAGAGGTTATGTATTCAATGCACTCTAGGATTCGAATGACACCTGAACACACATCTCTTAGAGAAAGTTCAGCAGAAATATCCAAAGCAGAATATTTGGCTCAAGGTAAGGTCTTCAGTGAGGAACTGGGAACTGAAGCTGTACCAGACAAAATAGAAGGACAGGATGACCAGAACCTTTCTATGCTGACTCATGCAGACTTTACTGAAAGCCATTCTATCCACAGCAGTTTAAACAGCAGGCCTGAGAGTCAAACCAACATGAACAACTCGGATATAGAAGAGTCCAACAGCACAGATGATGAGTCTCCAAATGCAAGCCAGTATTTGCAACGTGCCAACGAAGCAAATCTAACTGCAGATCAGGTAGACTTGTTAGATGTGGCGGTCTCTCACTATGAGGATTGCAATGCTCTTATAGAACATTCTGCAGAGGAGGTCACTAGCTATCAGGCAAGTCATGAATGTCTTCAGACAGACAAATGGGAAGTCTTAGAAAGTCCAAACAAACACCTGGAATCTGGAGATCCTTTTGCAGGTCACAAGAGAGACTCGGAGAGATCATCCAAAACTGACAGCAAAGGCCGGGACCTCCACAGCTTCCTCAGCTCTGGTGTACACAGCAACTTCTGGGGTTCCAATCTGGAAACAGGAGCCTCCTATCAACCGGACGAGCCATATGACCATGTGACCAAGCTACCCAATCAGAACCTAGCCTTGGCTGATAACCTATCCTGGGTGGATTTGGAATCCACAGGCGGCCAATTGGAACATAAAGATGGACAGTGACACATCTAAAGCTTCCACCCTTGAAGAAGAGGACAAACAGATGCCCTCACAGGTGAAGCAGCTGGTGTGTAGAGATGTAGTAGAGGGTGTGAATGTTACTTCTGAAGGTTCTGAAGATGAGGGAGACTCCAGGTCATCTGGGGAAGAATAGGAACAATTTCAGCATGGTTTCTATAAGGAGTAAAGTAGAAGTAACAAGTGTTATTGAGAGTGTAATACTATTTACACTTTACAGGCTTTGAATATGAGCATTGATTCACATTGATCCTTACAGTGAAAAGTAATTGAAAGGATAATATGTCACAGAATGTCATGACAATTCAGTGCTCTCTGGAATCCTTGGGATGTTCCTACCCtaaaccccaaccttaacccctaccccacccttaccttaaccctaaatataaccataacccttacctacaccatttaaaatgtcaacttcaatggggtagggacgtcccaaggatgcGAGATAGCATGGACCGTCAAATATTTATGCTGTTTTCAAAAACCAAAGTTGTGCCTTGGTGCACACCCTGCTGACACTAACCACCAGTGTACCTACTCCATTTCAAGACATTGAGGGCCATTTTTGTAAGTTTTACAAATGTATGTTTGAATAGCCATTTTTCTATTCTTTGGAGAACAAAAGTAACTTAGTTAAAAACCAAATAAAGGACATTTGAAAGTCAAAGCATTCTTGATTTGATTGCACTGATTGAAGGAAATCAATTAGAGAAAAAGTGAGAACCCAGGTATTTCAATGCACAAGACCTGGGAGCCTGTTTTTCTAGTGGCAACTTTTATCTTAACATCGTAAGCAAGTTTATTTGATAAGGACTCCAGTTGATATacacagtaccttcagaaagtactcattcCCCATGACTTACTCCAATGAGAAGTGTTATTTATGATTATAATTTGAATTACAACTCAAACACTACAAGCAGCAGTGCAGTGGTTTGAAATCCTAGAAGAACAGCTTGCCTTCATTTTAATAAATATAACTAACAGACAATGAAACAACATGGTACCATATTAGCTATGCTTTGTTAACCATTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271503 lncRNA downstream 87108 24101852 ~ 24102101 (-) True G237594
TU271502 lncRNA downstream 87741 24101224 ~ 24101468 (-) True G237593
TU271476 lncRNA downstream 130597 24058344 ~ 24058612 (-) True G237567
TU271472 lncRNA downstream 143538 24045463 ~ 24045671 (-) True G237563
TU271429 lncRNA downstream 221502 23965964 ~ 23967707 (-) True G237522
TU271585 lncRNA upstream 835 24199648 ~ 24199944 (-) True G237663
TU271624 lncRNA upstream 57072 24255885 ~ 24256465 (-) True G237701
TU271626 lncRNA upstream 85386 24284199 ~ 24284429 (-) True G237703
TU271628 lncRNA upstream 86744 24285557 ~ 24285790 (-) True G237705
TU271638 lncRNA upstream 101380 24300193 ~ 24300653 (-) False G237714
XR_005041888.1 mRNA downstream 110356 24067930 ~ 24078853 (-) True LOC118947709
XM_021594003.2 mRNA downstream 208909 23975874 ~ 23980300 (-) True LOC110514815
XM_021593963.2 mRNA downstream 339285 23841341 ~ 23849924 (-) True LOC110514697
XM_036972601.1 mRNA downstream 340409 23841341 ~ 23848800 (-) False LOC110514697
XM_021593956.2 mRNA downstream 348697 23832402 ~ 23840512 (-) True LOC100136261
XM_021594018.2 mRNA upstream 18692 24217505 ~ 24221711 (-) False gpatch4
XM_021594020.2 mRNA upstream 18692 24217505 ~ 24221727 (-) True gpatch4
XM_021594039.2 mRNA upstream 60268 24259081 ~ 24282799 (-) False LOC110514890
XM_021594042.2 mRNA upstream 60268 24259081 ~ 24286618 (-) True LOC110514890
XM_021594060.2 mRNA upstream 114742 24313555 ~ 24323816 (-) True LOC110514944
TU271573 other downstream 5245 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 5655 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 409074 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1000178 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1614220 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 322406 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 570749 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 570891 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 737703 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 737854 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile