RNA id: XR_005041909.1


Basic Information

Item Value
RNA id XR_005041909.1
length 1530
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110505138
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24204483 ~ 24207629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCTGCTCTCCACTCTCAACCATTTCGAGGAGCGGCAGTGTGTTTGGGGCTTCTTTGTGCCCTCTTAGTTTCAGCCATTATAGGCCTCTGTGTCTACTGTGAGTATGTGGATCATAAAGTATTATGGATTTTGGAGAGGTGTAGAATGACATCGTAGAGTAAAcatgtccttctctctccatagTCAGCACTGCTCTCTCAAAGCACAACAGAAAGTTAGTGGGGGAACTGGCGGCCAATCAGGACCTAATGAATCTCAATAGCAATCTGAGTACAGCCAATCACATTTTGCAGAGTGATTACACCAATGTCAGCACTACAAACCGACGTTTAGCGGCAGAGAAAGAACATGTgtcaagagagagggatagactgAACTGGAATCTTCAGTTCATATTTCAGTTTGATGACTTTCCGGTCCAGAAATATTGTTCACAAAACGTTGGCACAGGAGagagagtgtgtaacTCTTGCCAAGATGGCTGGATTTTGTTCCAATCTAGTTGTTACCTGATTGTGCAATATGACACTCCATGGAAGACCTGGACGGAAAGCCAACAATATTGCAAACAAGAGAAGGCTGATTTGCCCGTCATTGGCAGCCGAGCAGAACAGGAATTCGTTCATAGCCACACTAAAGAATACTATGATAAGTACCATGGGTATTGGATCGGTTTGACGGACAAAGCTGAAGACGGCAAATGGCTCTGGGTTAATGGAGGTCATCAGAATCTGACTGATGGGTTTTGGAACAGTCAAACTGGGGGTGATTGCGTGTTAACTGTCCCAAACAATGCACCATTGGCTAATTGGAATGCTGTACGGTGTGATATGCAGAACAGTTGGATCTGTGAGAGTAGAGCATTAATATGGTCAGATTAAATTGCAGGGACACTCTCTTCAGAGGTATTCTCACATACTGAGCTCATATATTATTGCATCTTCCTTTGAGAATTCAATTAAGTTGTATTCTTCTCATTGAAGGACCCCTGCATCTGCTTGTTGGGGTCAAATCAGATTCACTCAATTCAGGAATTGATTTTAATATAGAATTCACAAAGGAAAACCTTAATTGGCTGACGCAAACACAGGTCTGTTTTGTACGTTTTTGAAATGTTAACAATCAACGATCTGTTTTAATGTAGCTTTGGTGAATTGAAAAAATAATGTTTAGTTTTGAGCTCTCATATAAATCAGGCACATTTTCTTTCACATCAATTACTTCATTATGACAATGAATTAGTGCTCTTATATTGTCTTATTGTATTATGTTTTATACAGTTGTTTCTATGTTCACAATCAAAGATCAACTgtatgtatagtagtgttttagaATAACATTTGTTTTGGCCTTTCATAGATCAGAAATCATATAATATTCAGTTTACAAAGTAAAGCTGGACTTGCCATCCAAGATTTTCTTCCTTCAATTTTTAAACTTCTTAGCATAAGAAGTACAAGTTTAtgatgatgctgtcaccaccatactccaccgtagggatggtgccaggtttcctccagacgtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270619 lncRNA upstream 19827 24184352 ~ 24184656 (+) True G236782
TU270635 lncRNA upstream 102128 24102140 ~ 24102355 (+) True G236798
TU270597 lncRNA upstream 103625 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA upstream 135985 24065964 ~ 24068498 (+) True G236762
TU270586 lncRNA upstream 151360 24052892 ~ 24053123 (+) True G236752
TU270683 lncRNA downstream 7752 24215381 ~ 24215807 (+) True G236838
TU270687 lncRNA downstream 14644 24222273 ~ 24222648 (+) True G236842
TU270689 lncRNA downstream 16350 24223979 ~ 24224206 (+) True G236844
TU270614 lncRNA downstream 51454 24259083 ~ 24261294 (+) True LOC110514864
TU270716 lncRNA downstream 84368 24291997 ~ 24292241 (+) True G236871
XM_036972730.1 mRNA upstream 20227 24105516 ~ 24184256 (+) False LOC110503950
XM_036972719.1 mRNA upstream 20227 24105517 ~ 24184256 (+) False LOC110503950
XM_036972757.1 mRNA upstream 20227 24105517 ~ 24184256 (+) False LOC110503950
XM_036972767.1 mRNA upstream 20227 24105517 ~ 24184256 (+) False LOC110503950
XM_036972785.1 mRNA upstream 20227 24105517 ~ 24184256 (+) False LOC110503950
XM_021594024.2 mRNA downstream 19283 24226912 ~ 24259547 (+) False LOC110514864
XM_036972869.1 mRNA downstream 19283 24226912 ~ 24259547 (+) False LOC110514864
XM_036972877.1 mRNA downstream 19283 24226912 ~ 24259547 (+) False LOC110514864
XM_021594059.2 mRNA downstream 92078 24299707 ~ 24313412 (+) False LOC110514930
LOC118947812 mRNA downstream 134933 24342562 ~ 24352353 (+) True LOC118947812
TU270587 other upstream 148816 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 275396 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 409288 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 541776 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 558037 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 567650 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 987658 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1333140 25540769 ~ 25541613 (+) True G239026

Expression Profile