RNA id: XM_021594018.2


Basic Information

Item Value
RNA id XM_021594018.2
length 2047
RNA type mRNA
GC content 0.45
exon number 7
gene id gpatch4
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24217505 ~ 24221727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattggatgccaaccgccgttaaacctcatcgaagaagAATAAGAAGCGTAGTCTTTTCCGGTGCTGTGTCAGCCTGCTGAATTTACCTCATGGTTCCAGTCGAACTGTGAACCGTTTTTATTTATCCCTTTTGAACAACAATGTGAGTCTAGATAACCAGATGAGAAAAAATGGCAGAAACTGTTCAGGAAAAGAGCCGTGGACTGAAGTTTGCAGAGCAACAGCTACTGCGTCATGGCTGGGAACAAGGTAAAGGTCTTGGTCGGCAGGAGAATGGTATATCTGAGGCTATCAAAGTCAAAGTGAAATGTGACAAGGGAGGAGTGGGACATCGTCAAGGGGAGCAGTTCACCTTCCATTGGTGGGACCATGTCTTCAACAAAGCATCTTCTAGCCTGGAAGTGGAATCTGGCGAGAATGGTGTGCAGGTGAAGaagttggtggaggaggaagaggaaggaatgATCTCCAACAAGAAGCCAACGAAAGCCATGTTGGGAAGAGACAAACTTTATGGATGCTTTGTGAAGTCTGCCACCCTCCTGGCAGGactggagcagccagagcagaaGTCCTCCAGTACAGatgacagcagcagcagctctgACGATGAGGACCAGAGACTGGACCTCTCCAGCACCACCAAGCTATCAGACGCTGACCTGGTGAAGGCTTGTGGAGGACGCACCGCCCACAAAGGAGCCAGACACGGCCTTACCATGAGTGCCAAGCTAGCCAGACTGGAGCAGCAGGAGCAAGAGTTCATGGCAAAGTATGGCAAGAAAAACCAACTAGCGGCTGCAACACCAGATAGCGTCACTACCCAGCCAGCTGCCCAGATCCCTGAGGATGAACTGACCCATGAGACCCCGGGGAAGAAGACCAAAAAGAAAAAGAGGAAGAATCACTCAGAGGATACCCGTGAGAATGTGGCTGAAGAGAACGCTGATTCTGCTGTTGTCTCCAGAAGTACCAACAtgaaaataaaggtgaaaaataagAAAAAGAAGGAAAGTTTAAAGGAGAACACTGGGGAGGTGGCGGTGGTTCCTGTAGAGGAGGACGATAATACAGCAGACAATGCTCAGCCAACCAAGAGGAAACGTTCAAAACAGAGGAAGGTGTTGGAAGAGGGCGAGAGCTGTCATCTAAATGGAGAGGTGTGTGAAACTGATATCATTTCTATAGAGAGTGAAGCCGGAGGAGGCTGTGAAGACGCGTCGGAGGGAGAAGGTGCCACTCGGCAACAGACGGACTCCTACACTACTACCAAGAAGAAGAAGTCCTCCAAGAACAAAGAGGTGGCTGAGGAGATGGAACACTCTAAAGATGGAGAAACCAACCAATCAGAAACTGTGGCGGACTCCCCtccaaaaaagaaaaagaaacggGATGGAGCAATAGAGAGAACAGTGGAGGAGGAACctaaaataaaaggtaaaaaaaataaatgcaaaGCGGTCAAGCAGACCGTAGAGGACAGTTTGCACGATGTATTGGACTCCATACCTCTAAACAAGAAAAAGAAGAAAGCTAAACAACAGGAACCAGTTTGATGAGGACTCGTGGTTGCCTTGTTGGAAAGGAAACAGGTCAGGAATTTGGGCCAGCGCTCTAATACATCTTATAAACACATGAAACCATCGAATGAAATGCAGTATATTTTTAATTAACGGCTTATTGCAACACCATGCAAAAAGGATGTTTTGTTTCTTGTCAACATATTTATTTGTATGGAAAGATTCAACTACAGACTattaagaaaatatatatttagtcGTCAACTAGTGTTTTTATACAGCTTCTTGTATGGTGGTCTTGTATTGTTCATATTCTCAACATGGATGTTTTAAACAATGTGATATCAACATCAGATATGAGGTTGCTATGTATGAGCACAGTAATGTATTTTCTTTTCTCAATAAACTTTCCTTACTACTTTGTGTGATGAGGTACAAGTGCCAATTAAAGCTGCTGATTTAGAAGTATTACATTGTTTATAAAACAGTGATTTTATTAAAAGCGGAACCTATGAAAGCCCTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271585 lncRNA downstream 17561 24199648 ~ 24199944 (-) True G237663
TU271503 lncRNA downstream 115404 24101852 ~ 24102101 (-) True G237594
TU271502 lncRNA downstream 116037 24101224 ~ 24101468 (-) True G237593
TU271476 lncRNA downstream 158893 24058344 ~ 24058612 (-) True G237567
TU271472 lncRNA downstream 171834 24045463 ~ 24045671 (-) True G237563
TU271624 lncRNA upstream 34174 24255885 ~ 24256465 (-) True G237701
TU271626 lncRNA upstream 62488 24284199 ~ 24284429 (-) True G237703
TU271628 lncRNA upstream 63846 24285557 ~ 24285790 (-) True G237705
TU271638 lncRNA upstream 78482 24300193 ~ 24300653 (-) False G237714
TU271640 lncRNA upstream 78482 24300193 ~ 24300612 (-) False G237714
XM_021594009.2 mRNA downstream 18692 24189209 ~ 24198813 (-) False LOC110514831
XM_036972836.1 mRNA downstream 18692 24189209 ~ 24198813 (-) False LOC110514831
XM_036972840.1 mRNA downstream 18692 24189209 ~ 24198813 (-) True LOC110514831
XR_005041888.1 mRNA downstream 138652 24067930 ~ 24078853 (-) True LOC118947709
XM_021594003.2 mRNA downstream 237205 23975874 ~ 23980300 (-) True LOC110514815
XM_021594039.2 mRNA upstream 37370 24259081 ~ 24282799 (-) False LOC110514890
XM_021594042.2 mRNA upstream 37370 24259081 ~ 24286618 (-) True LOC110514890
XM_021594060.2 mRNA upstream 91844 24313555 ~ 24323816 (-) True LOC110514944
XM_021594062.2 mRNA upstream 99033 24320744 ~ 24330914 (-) True LOC110514960
NM_001160633.2 mRNA upstream 109815 24331526 ~ 24336143 (-) True mapip
TU271573 other downstream 33541 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 33951 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 437370 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1028474 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1642516 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 299508 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 547851 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 547993 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 714805 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 714956 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile