RNA id: XM_021594039.2


Basic Information

Item Value
RNA id XM_021594039.2
length 4518
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110514890
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24259081 ~ 24286618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtccctacctctccctccttcctgctgtctttctctcttcagCGATACATGTGCAGGGAGAGACTGTGACGCAGCCATTCCAGAGCGTGAGCCAAAGGCACACAGACAGCACTGATCCTCCTCCCTATACTCCACAGGGGCACCCCAGACCCAGAGAAGAACACCTATCTACAACACACAGCGGCAGCTGAACTTCCAGAGAGGTCCGGCTGTGCAGACACACGCACTGCTCCACCAGGAGGCTTCCACTCACAACCTCACACTCTCACTAAGCCTGTCTCTCAGCCAACCACCTGAACCACTTACTGGATGTCCACTATGGAAACGGGTCAGAAACGAACCAGCCGCGGCGGAGCCACCCCCCAGCTCACCCCAACTCGCATTTCCCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATCGACAAGGTGCGCTCGCTGGAGATAGAGAATGCTGGGCTGCGGATGCGCATCACTGAGTCCGACACCGAGATCAGCCGTGAGGTGACGGGCATGAAGGCGGCCTATGAAACGGAGCTTGCCGACGCCCGAAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGAAAAGTCAAGGAGGAGTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCGGACCTGGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTCTGTCCACCGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTGAAGGCCCAGCTAGCCAAGCTGGAGACCGGTCTGAGCGACGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCATCAAGGAGGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCCGAGGCCCTGATAGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTACAAGGAGGAGATCGAGAAGACCTACACCTCCAAGCTGGAGAACGCCCGTCACTCTGCAGACAGGAACAGTACCCTGGTGGGGGCGGCCCACGAGGAGCTGCAGCAGACTCGCGTGCGGATGGAGGGCATGTCCTCTCAGCTCAGCCAGCTGCAGAAACGGCTGGCGGCGAGTGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGAGACATGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTACCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCAAACCCGAGTCACCGTGTCCCGTACCACCGGCTCGGGCTCAGGACACACACTTACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGGTCGCATGATCCAGTCCACCAGTGGCAGCCGCAACTCCTCAGGCACGGCCAGCGCCAAGAAGAGGCGTCTCAATGACAACGACAGTGAGACCTCCAGCCTGGCGGGGGGTGCCGTGACGCGTACACGCATCGCCCAGCAGGCCTCCGCGAGCGGCCGCGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTTTGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTCCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCAGCAGCACTCCCATCGTCTACAAGTTCCCCCCCAAGTTCAACCTCAAGGCAGGACAGACTGTCACAATTTGGGCTTCAGGAGCAGGTGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCACCCTGATTAGCGCCAATGgggagGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCGTGTGGCCAGCCGTCTGATAAGAGCTGTGCCACCTCAGGGGTGTCCAGCGGCTCCTGCTCCGTCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCTCTCTTCATAATGGGCAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAAAGCCAGACAGGCACCACCTTACCTAAGACATCAACCTCCCACACATGGATGGGAGATACTTTCTTACTCTTTATTTGCTTTGTTTCATATATGATCCGTCTTATTTTGTATGCCATAATCGGCAGGTTAGATTGACTTTGGTGTTTGGCGAAGGGCTTAGGAGCTGCCTATTCACTTCAGATATATGAGCTTGTATATTCTAGGTATATTGCATGTGGACTGGGCAGATACTTCCACTGTCTTGGGCCATATCTAGGGAGAGAGGACCAGAAAGCACCTTTACCATTACAGTGGACTTTGATCCATAGTGGGCTTTCACGTCTCGTGTCTAAGCTGTCAACCGTAAACACGCACAGCCGCAAATCCTGCTATGAATCTGTGGACATGAGGGCTGGAATCAGGGTTCTCTGCCCTGGTATTCCACATACACTACCATAGAATGTCCTAAATGTCACTAAATAGAGATGGAGTTAACCCCCTCAGACTCCTGGAGGCTTATGGGGGTTTGTATTAGACTGAGCGATGGGATTGGTCATTCTAAAGCCATAGTTACAAAGAGGAGCTCAAACTTGACACTGTCATCAAGGTGTTTATATTTCTGAACACAAGACAGTAGTTTTTTGTGGAATGACATGTCAATTATTACTCATGAATCAGTCAGACTACTATGGTGATATGGATATAGGTTCCAAATTGTGACTTGTTTTCTCAGGCTTGAAAGAGGTATGTAGTTGTTAAAGAAAGGATACCAAAACGAGATGAGCACACAGATATGGGGAAGACAAAGTAGTACTGTATTGTAAGGTCTTGACATGACTGACCTCTAGAAATAGTTTCCTCTTAGAGGATTACCTCTAACGTTGTCTgacttgacctctgacctcacctTTTGTCTTGTATGAAAAAACAACAGTTACTGTAGGGCAACTCATCAGATCTAGACACACATATGATTTCTTTGCCAGATGGATTATAGTAATGTTACTGTAACATTCTATTATGGTTTTGCATTTTTAGGGTTGAGGGAATGTGGCAGCTTGAGAAATAGATGTTCTGGTTTGTCAGACTCTAAAGACAGAACTTGTCTGAGTTGGAAGTGTGTTGATTTAAATGAAAGTACAATGCTTAACTTCTCAGGACAGCATTGCAACAATGTGTACATTCTGTACCTTTTGTATCAGGTGTAGTGTCAGAAAGAATGGGTACAGATAGTTAAAGATAGTAAGCATGAGCCTGAACGGCCCATAGGGGTAGTTGGACTATATGGTATTATCTGGCCAAAAGTTTACTTTATTAATGAACTACACAGTATGTTGGTGCCATATTTTCAGTGTAATCAATTACTGTGTTTACATTTAAATGGTGCATAAGAACTCGCTTTGACAAGGTCAGAAAGAGTATTTACTTGAGAAGGAAACCTAAATGAGACTTAACATCAATTCCTCATGATATGATGCCAATCCTCTGTATTTTTGTATTGTAGTCTTGAGACTATTGTCCTCTCTCCCACTAAAGGAttataatggctgtgtttttctgagcTTAGTGGCTTTGCTTTTgggtattttttgggggggtgggggggcttcTTATTTCTTTACAACTATGTCAAAAATGAGCTATAATCATCTACAAAGCTTTATCCACTTCATATTAGAGGCATGTACTAGTCTGGCAGCCTTTTTTTATAGAATGTATAAGCAGTAAAAATTTTCTGAGAATACTTGATAGTTTTTGCAacattgtgttttttttgtactTCATACACATTTCTATCACTACCAAATAGGAGAAAAGGTGCTTATTCTCACTGTTAACCGAAAAACCTTAGAGAAGCTCAAACTGTCCAAGTAAAAAATGATTATTTCTTTTCTCATCATGTCTCAAGTGCCTTATTGATACCGGCTAGTGATCATTGAAAATTGTATTCTTTTTGCACTATGAAGTGTCAATTCCAAAGATATGCGGTATTGTCTTTAAAGACAATGGAAATGATAGATTTACAGAGTATGTTGGCTATACTTGCATATTTGTACGGAAATTGTCCTGGTACATAATGCTCAATTGAATTTGTAAGAAATGATTATGCCTAATATGGAAAATCCATGCAATCCAGGTAGAATGTAGTAGTGATTTACAATGTTTTGCCTTTTATGTTCGAGACCAGTAAACTTATTTTCCCAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271624 lncRNA downstream 2616 24255885 ~ 24256465 (-) True G237701
TU271585 lncRNA downstream 59137 24199648 ~ 24199944 (-) True G237663
TU271503 lncRNA downstream 156980 24101852 ~ 24102101 (-) True G237594
TU271502 lncRNA downstream 157613 24101224 ~ 24101468 (-) True G237593
TU271476 lncRNA downstream 200469 24058344 ~ 24058612 (-) True G237567
TU271626 lncRNA upstream 1400 24284199 ~ 24284429 (-) True G237703
TU271628 lncRNA upstream 2758 24285557 ~ 24285790 (-) True G237705
TU271638 lncRNA upstream 17394 24300193 ~ 24300653 (-) False G237714
TU271640 lncRNA upstream 17394 24300193 ~ 24300612 (-) False G237714
TU271637 lncRNA upstream 17448 24300247 ~ 24300653 (-) False G237714
XM_021594020.2 mRNA downstream 37354 24217505 ~ 24221727 (-) True gpatch4
XM_021594018.2 mRNA downstream 37370 24217505 ~ 24221711 (-) False gpatch4
XM_021594009.2 mRNA downstream 60268 24189209 ~ 24198813 (-) False LOC110514831
XM_036972836.1 mRNA downstream 60268 24189209 ~ 24198813 (-) False LOC110514831
XM_036972840.1 mRNA downstream 60268 24189209 ~ 24198813 (-) True LOC110514831
XM_021594060.2 mRNA upstream 30756 24313555 ~ 24323816 (-) True LOC110514944
XM_021594062.2 mRNA upstream 37945 24320744 ~ 24330914 (-) True LOC110514960
NM_001160633.2 mRNA upstream 48727 24331526 ~ 24336143 (-) True mapip
XM_021594051.2 mRNA upstream 53925 24336724 ~ 24342873 (-) True LOC110514914
XM_021594076.2 mRNA upstream 78684 24361483 ~ 24373454 (-) False LOC110514995
TU271573 other downstream 75117 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 75527 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 478946 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1070050 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1684092 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 238420 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 486763 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 486905 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 653717 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 653868 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile