RNA id: XM_021594059.2


Basic Information

Item Value
RNA id XM_021594059.2
length 10021
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110514930
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24299707 ~ 24313412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGAGGGGGAATTATTAGGCTATAGTCCATGCATCCTTGTGTAAGTAGCATACAGTACAAAGACCGTTGCGGTCTTGCATTGCAGGGATGGGGAATGAGTAGCGTGGCTTGGATCGAACGCATGGCTGATATGGACAAAGAAAAGGTGGAGGAGATATTTTTATAGTTTTTTTCTATACGTGGGGAAAAACGCGGGGGTTGGTTTCTGAGATGCCACAGGCTTGGGAACCTGAGACGGAATGGTATAACGGGAGGACGGCTCTTTTTGTCTCAGCAAGGAGGGGACTGTATACCAGACGGGGTGGAGTGATACATTGCCTAGCCCCTCTCGGTGCAGACGGCCTTGTGTCCCGTTTGCCTAGAGCTGGGAGAATACTGTATCGCAAGTAGGCCTAtagcaggcagagagaggggccGGTCTATGGGAGGGACTAGCGCAGAGGGAGAATTGGAAGAAGGAGGGGGCGGGGAGGCGGCACGGGTGCTGTTTCTCCAGTCTCTTTCCCCTGTCTTTGTCTCACACTCTTTTGTTAGCCATGCCTAGCCTGCTGGTTCTAGCAGGGATCATGGAGAAAAATGGGGGCTACGGCGGGGATCTAGCCGGCTCCGGGTTCGGAAGCGAAGGTCTCCTAGTGCCACCCGACGAGGAAGAAGACGACTCCCGTGCCCTGAGGGTCGCGCTGGGCCAGCTGTCTCTACTGGGGCTTGGTGAAGGCGAGGACGGTGGCGGGGCTCCTGGAACGGGAGTACAGGATCGgagtaacaataacaataaccatcACAACCATACCAATAATATTGGCGGAGGTGGTGGTGACACAGGGCTTTTGCAAGGGAAGAACAAGTTATGTGTCCTGTACGAGGGTTCAAGTGAGACGAAAGGACGAGGCTGCAACATAACAGAATGCGTCCCCGTGCCCAGCTCAGAACATGTGGCGGAAATAGTGGGGAGACAAGGTTGCAAGATCAAAGCCTTGCGGGCCAAGACCAACACCTACATCAAGACCCCTGTGAGGGGCGAGGAGCCTGTGTTTCTCATCACGGGCCGAAAGGAGGATGTGGCCCTGGCCCGGCGCGAGATCATCTCTGCCGCCGAGCACTTCTCCATGCTCCGAGCGTCTCGCAACAAGCTTGGCGTGTCCTTCAGCGGTTCCCCGCCTGCGCCCCTGCCGGGCCAGACCACCATCCAGGTGAGGGTGCCCTACCGCGTGGTGGGGCTGGTGGTGGGGCCCAAGGGTTCCACCATCAAACGCATCCAACAGCAAACCTGCACCTACATCGTCACCCCTAGCCGAGACCGTGACCCTGTCTTCGAGATCACGGGATCACCCAGCAACGCCGAGAGGGCCCGTGAGGAGATCGAGGCGCACATCGCATTCCGAACGGGAGGTCTGCATGACCACAACAATGAGAATGACTGCTTGGGGCCGGATGGCAGCAGCCCAGTAGGCTCCGGGGGTCTGGAGAGCCGCCTGCAGCAGGTGTGGGGTCTGCAGGGAGACCAGCGCAAGCCATTGACCAGTAGCTTCCGCCAGAACTTCTCAGATGCCATGgttggaggaggggaaggaggtggGGTAATCTTTAGCAAGGGCAACTTCAACAGCCCTGGAGAGAAGCCCTGCTCCTACTTTGGCTCGGAGGGCACCCAGAGTTGGGGAGACCCAGACTACCCAAAACAGGTGGCCTTCTATGCCCAGCAGCGCTCCAAGAGCTTTGGAggcctgcccctgcccctgaccAGACTCTCTCCAGGCCTTTCTGACCCCTGTGGAGGGAACAACGGCAACTCCTCGGGCACCAGCATCACTATTCTGTCTGGCTCGCCTCATGCCCAGGCCCGCCGTGCCCACAGCGAGCCAACCTCGGGCGTGGGGTTCCCTGGACGCCTCCCTGTACCGGACTCGCCACCGGCAATCCTCCGGGACTGCATGACCTGCTTCGAGAGCAAAGTGACGGCTGCCCTGGTGCCCTGCGGCCACAACCTCTTCTGCATGGAGTGTGCCATCCGCATCTGTGAGCTCAACCATCCAGAGTGCCCGGTGTGCCACACCCTGGTCTCTCAGGCTATCCGAATATTCTCCTAAAAAACACCACGTCAGTTTTTAACATTCGTTTTATCACAGTGTTTGTTTGACAAttatttactattattattattattattatacttttCTCAGAAAATTTTAAACAAACAAGCAGATATTTTAGAAGGCACTGCTTGCTTTACTAAAAAGTATAAGAAATATTTTGACTTTtttcttttatatatatatatatatacatatatattttataaaaGTTTTGTTTATAAGAAAAGTATAGTACCTAGCAtttcttctgtttttttttactgctgctgttttcaTTCACGAATCACAGTGTGGGCGGAGTAGTAGGAACGTGAACAGTTTACGATTCAGATTTATTTTACCATGAAGTTGTTTTAtatggaggaaaggaaggaggtgATCATTGAGGTTCAGTTTAACTCCCTGGTATCTTATCTGTAACTGAATGATATAGGAAGTCAAAATCAAACAGAAGGAAAAATATTTAATCTTTCATTGCACCTTACAATCGTCTTAGTTTCGGATAGTCAGATTAATGATTGTCAATCATCCAGAAAAATGACGTAGCTGATGAAAAGGTAAATCCCCCAAtgtggcaacaacaaaaaatggaaCAAACTGTGATATTGTCATTGAAAGTCTAAATTTGTTCCAATCGAAAGACAGACTATTCCATCATTGTCACCTTTCTGACATTTGTATCCCTTTACAAGCTCGTTGTTATACCTGGTAGTCCTCCCTAAACACCTGTAAGAATGGTAACAATATAGGACAGAATAGCAGACAAACGCCTTTCTTCATGCACATATGTTTTATAGATTTCGTTTTTCACAAAGAGGTGAATGAATGCTACACATTGTATTGCTGAAATGTTCACTTCTGTTACACCTTGAATATCACTGCAGTTTGGTGAAAAGTTTCAGCGATGCCTGTTCCTCGTGGCACTTGAAAAGCATGTTTATTTCGCCGGTGTTAAGCACTGATTTCATTTGTGAGGCCAAAAGCCTTGGAATTCTTCCAGTTGGCTAATTTGGGAGAATCGTCTCCCCGACGGACTAGTTTCAAAGCCAACTAATACCCACTTTATTGTCTTATGTGGTAATTTAGCTGTTATCTGAACGATGTAGGACAAAAACGAGAGCCACTTTTGACAGGCATCTCTCTGAGGTTTGCGCAGTTAGAGCGTCAGCCATTAGAGTGGACAGAAGctgaggaaaacactgagctGTTCTCTGAATTGGTAATAGAGTGTGCCTAAATGGGCGAAAAGCTCCTAGAATACAGTACCACCATCCACAGAGCTCCCTCGCCACCCCCGTCCAGCAGCTTTGTATTTTAGCTCAGAGGCCTATAATTATCAGAGCTGTGCAGGAGCAGGTGTTTAATAGCGCACTGTGGATGTGACCTCAACTTTGAGGTCTTTTTTAGCCCCCTCTTTTTCTATTTTCTTtgggagtcccccccccccccctgcttacTGTTCGATCGCTGGCTATTGAAGGTAGTAATGACTGCAGCCGACCCACAATGCATTGCTTCCCTGTGTGGGGCGTATTGTCTATGCCCAGTGGTGGCGTGGGCCCGGAGTGCTTGGACACGGCCCGGAGAGACTCATTGATAATTAGGCAAATTGTCCGGTCCAGGTGCGGACTGTGCGGGGGAACCTGGTGCTGACCGCCCCATCCCTCTGTCACAGGCACAGAAGGTCCAGTCTGGGTGCAGCTGGGCGAATGGGACCCCTCCTTCCatatccccctccctctttccttctctgctGCTCTGAGCTATCCCTACTGGGGAGAGGGGCCTCCTTTGTCCCAACACTCAGGAAAAAAGCAGCATATTTCAGGCTGCCAGCTCTGAAATGAGAGTGAGGGGACTTTGGAGAAAGAAAGGATATCAACAGTGTCAGTAGATACAGTAATTACCTAGTGTAAATTCTGCCACACAGATCCAATTCTTTGACATTTCCCACTGAACTAGATGTCTCCATGTGTTCTCAATAAGATAAGGGTTTGAAAGCATGCAGACATATATCATTTAAGAGTACGAGGAGTCTGATCACTTGGAGTTCATCACCCCACCCCAATTTGGATGGAGGCCTTTGTGACAGAGAGCGAGCGCAGATCGAAGTTTCCATAGAGAGCCCCCCCCCTTTATCTCCCGTCTGTATGGGACATCCTGCAGCTGCCCACTCACCACAATCACACAGGCTTAGCCAATGGCAGGCTAGCACTGGGCCTTCAGAATGAAATCAGACGATTGTAATTGACAGGAAAGCGGAGGAAACGCCCCATTTAGCCACCACTCATGCTGAATCAAATTACACACCCTTTGCCTCTGCCTTAGCCCCAGCCTGGGGAtttcagagggagggagggggattaGAGCCGTTGGAGGATAAGAGGGGGGCTtttgggggtggagagagagatggctgctCCCCAAAAAAAGAGAACCTGCAGATCTAGTCTTTGTGAGAGGGGTCATTTCTGTGTCTTCAGTGAAGGGGTAGTTAGAAGGCTGCTGCCTCATGTTTGCTGGTGGTGGCAGGTGAACAAGGTGATTCAGCTGCTCTCCCACTAACACTGCATCAGATCGCTCTATTGCGTTATTTCAGGAGAACACTTTTGCTCAACTTCTGTCCATCAAAATATGGCGAATAGTTACAATAGACTGTTGTCCCTAGTCTAGGCCGCAACAGAGCCCACTTTTCCCCCATTGTATTGTCAGCAGACCACTCCTGTTGTCTGTGGACTGTGAAGAAATTGTACTTTCAGAGTATCTAAATTCTATGACATATATAGAAATTAATTTAATATTTATGAATGGGGAGAACTGCACAGTGGTTTGGTCTGAACTTTCAATGACAATTTCAAGGCAGTATAACGCTGTTAAATGAATATAGTATTTTCTAttcttttttattttgttttaagccttaATATTTTGTATTAAAATATTAATATTGCTTTCACTTTGGCATGAAAGTTTAGTGACATACAGTAGGCCTTCAATAGTATTGCCCCTTAAAAAAAACTTTAACGTAACTATTTGTCAGAAAAGAATGTGAATCAACCGGGTTGGGTGGGATTAAATGGAATTGGGAAATTAGGCTCATAAAGACTTTACATTAAAATATAGAGTAAAGCACCTTATGAGAAAACACATAATTAATACCAAACTGACCGCTGATGGTGAATATTTCTTCATAGATTTTGAAAGCCATGCACATACTGTAAGGTTTCCCTTTCATGTTTTTCTAATATAATTATTGTTATTCcttgtagtagtggtattatgGGAGACCtctcatccattcagtcagtacTGATGACTTGGTTGAGTTTGCACTGGTTTAATGAGGGCTTTTTAGAGAGTCTCACTGTTTTAGAGGCTGTGGGAGAAATTTGCATTGTGCTTTATGAGAAAGGATTCTGCGcatctgtgtatatatatatcagtaATTTACGTCCAGTCAAATGCCTGCTATATAAGTGGGATTTTGATTATTTTTACAAGGTGAAAATATCATTTTGAATTTGTTTGTTTATGGACTTTGAAGATTACtttgatttatatatatatatatatatatatatatatatatatatatatatatataatgtcccCTCATCCTTAAACATAAATACGTATATCGATAGGCTACTTATATGTATGGATCTAATACACTTAAGCATTTCATCAAGTCAAATATATAGATAAGAATACCACAATACCACATACTGTAATGATGAATACAGGGCTGTATTGATGTTTCCACTGACATATACCGATACATTCTCTCAAATATGTAAAGACATGTGTTCTAAAATATTCCTAGATCCTTTTGGATGAATCAGGTTTTATGTACATTAGGATGAAAAGCAATAATGTCAATACTGCAACAGTAAACAAAAGAGCCAGTTTAGTAAGTTCAAAGAATTCAGCGCCATCCATAACACAACCTTGATTCATTTGGATATTATTCCATTTTTGTCTATCTTCTAAAAATGCTGGATTTATGCCAATTTAGGATGAGAAATGTAATTAATTAGTATCGGTTTCAGGCACAAGAGCATGTTTTTGTTGCTTTCCTACGTCTTGCTTTTAGTAATTTTTGACTGCTTAATCCCGTCTTTTTAACATTGAATATTAATAAGACTGCAAGCATACCTCAAATACAGGGTGTGCCAACACCAGTGCAACCTCAAGAGTTCCTCTTAGTATCTGTGGAATTTTGAGAACACAATACCTATTATTTGGAAGAAACCAATTGCATTGTAAAAGTAAGCTTTTCAGTGTACATACAATGCTTTTCAGGAACATAACATGAACAATTGAGGCATTTCCTGTCTGTCAAAAGCAGGAACTCATAACTCCTATGGTGATAGATTGGTGTTTAAGTGACAACTTAAATCACACACTAAAGTAGACGCAATGGTAAGACAGAAGGTTGGATTATTTGCATAGGATCTGTCTAAGACCTCTTCCATATGAACGTATACTGATGCCCAATGCATTGAGCCAAACATTTTCATCACTTGACAAAGTAGCATTTATTTAACATGTATTACTCTGTATTTATTCATGTTTAGGGAGAAACATTTATAGTTACCATAAGCATATTTTGAgaatatatttcagtttttagaTTGGTTCCAAAACATGTTTTGTAACTGATTTGATGGCACAATTTAATTATTTCTTTATGCTGTCTGTTATAAGTAGTTGTCATTATCCAGCTTTTAGCTGATTTAAAATAAAAGGTCAAAAGGTAGCCAAAGAACAAAACCTTGGGAGAGGTTCGAGGACATCGATTGGAATTATATTGCTGATCATAAGCTTACAATTCTACGAATGTTAACACATTTCACCCTTATCATAGTTTGGATTTATTGATGAAGGTGGCTGAGGTCAATACAATAATAATCAGcgtttgtttttaataacctacTAGTGATAGTTTTGTCAAAAGTCGTACAGCATACAAGCTTCAGTCAATATCTGTGAAATGGAGCTTGTCTCAATAAAGACATCCTGTTTCAGTTTGGTCTTGTTTTATGCTACAGTAGCTTCAGTGATCAACTACCCAATCACTGCCCAAAGACACCAATCTTAATGCGTCACCCTCTTACGTTGTATTTATATTGGTATTATTGCCAACTTAGATTTATAAATAATTATGTCAATAAGTTTTGTTTCATCATCACAGCTGTTAATGTGAAAAGGCTAAACTTGTCTTGGAAAGTTGATGTTTCTTCAGAATGGGGCAGGAAAACATACTAAATTAGAAAAGGAAGGGGTAGAGATATGTATTTGTTTACAATTCTGTTCAAATTCATGTTGAATTGCAGCTGAAGGGCTAGATTCGTCTCAAAGACCCCAGACTGAACAATAGTTGAATAATGCATAAGAAAGTTGTTAAGATTACACAAATACCCTGCAGTAGCTTTGTTAGAGTTTAAAAAAACAATACTGTGGTTTTCATTTAATATTGTTTATAGTTAACTTTATTCACCATGTCAAAGTATGATAGTTgaagttcagtacagtacataagAGTAACAGTAAAATTAAGATCCCATGGCATTAACATATTTCATCAACATAACCACAAGGTGTATAAATAGCTTTAAAGAAATTAAGATGGACATATATTTAATTCCATATATTTACCTTGAGGTGTAATTGATATAGAAATTCAAATAATGACTGTCTTATAAGATGAGGTATAGCTTGATATATGCACCCACTCTACCAGAATATGAAGTACTCCACTTCCTTTAGTGGAGAAACAAAGATGGCGGTGAGATAACTCTTAGGGGGATGTCTATTTCATTAACCATTTTTTTCAATTGTTAGTGTTCTTTACAATATATTAAAGTAACCATAGAAACTCTGAACAGTTTTCTTCTCTTTAACAAATGTACAACTCTTTATGCATTATGTATAACAATAATAGCACCCCTTTCAAGGAGTGATAGGAAATCCTTTAAATTGATGCACTTAAGCAATTATTCCGACCTATCATAATCACAAGATGAGCAAGTAATGCATTTGAATGTAAAATAAATTACCAGTGCACTCCTTTTACCTATTGGTTTATACATTTTAAGTGAGCTGAAAATAAATTGTGAGAAGGTTTCATCGCAGTCTATATTTGAGTTCATCCACATACATTTATAGAAAGCaacttaaaaataataatactattaCAGTTTCTTAAATCTATTTTGCTAACATGGGTTATTATTTCATAGAAAGACGGGGAATAAGTCAGTTTCTGGATGTTATTTATGAAAATCTTAAAATGAAGAAAACATATGAGTAACCtcaagaaatgtgttttttagtTAAAAATTCAAAAAGTTAATATATTTCTAAACACAGGAAAGTTGGTTTCTGCTAAcggtaaagaaaaaaaaagttttatttaTGAAAGTTATGGACTTGCCTCCACTATATTTCATTGTAAATGAAATAAGAGTTGATGTGGGTTCCCCATAGCTTATATTTTAACTTCCGATATGCACTATTTCAAAGAACACCAGTGCATTCACAGTGGAATTATGACagaaaataatataatattttttaGGATTTGGAGGTATTTTAGTCACTGAGCATCAATTCCATGCCTCAATTACACCTTTTTTTCTTGCATCAGCACTCGTTCTCTATGCTGCCTGCTTACCTTTTCCCCTTTGACTAACCCCATACTGACTGGCCCCATTACACATTTCCTCTGGAGTCTTAACTTGCTTTTATTAATCTCTAACTTTTTATGCTAACACAGCTTCAGTTGTGAATACAATGCTGAGAACGAGTGATTAAGGTGTCCCGCAGGGGCACATGTAAcgtatacagatacacacacattcatatgTCTACTACTTGGGACCCTTTGTGATTGGTAAGGCAAGAGAGGACATCATCAAAGCCTTAATGAAGGATTACCTAAACATTTGGGCTCAAATTTCTTCATGAAAACATGACAGGGTGGGAACTGAGCTGAGTGATCAATAGATTAGCACATAGGCACACTGTGTAGTAGATCTATGGtaaccagccacacacacaccaacacattcatATCCGTACTAGTTTGCATGTATCTTGTATGGTCACTTAGACTGGATAAACACCACAGATGCTATGTGTTTGGTTTTAACACAAGGGGTCTGGGGCTGGTTGTTCCTTGTAGATTTTCATAGTTGGCGCCCCTTCAGAAACAGAAAAAAAGGACAAGTGTTTCAGGTGAAGCAAAGAGAGACCGTTTCAGTCCCCTTGTGACACTCAGTATTTTGTCCTTTTCATTTTCTCATCACAGTTCTATAAAAGGGGAGGAAAGCTTGGTTGTCATTCCTTCACATATGGATGAacctaaaatgtatttatttaaatctGAAAACTAGGTAGTTAAAAGTGAACATTTGTCATTACAATTCAACATGCCAGGACGGTATATTTTCCGCCACCACTGACTGAAGCATGGGGACTGAAATGACCTTCCGGCCTTCACGTTGTCCTCTTCTGAAGGGGCCACTGCAGTCTGACAGTTTGTCTTTGGTAGTGTTTCTTCAGATTCTCCCGGCAACGTAGAAGTGTTTCATACCGGTCTTATAGTGGTCTTTGTGCATTAGTTTTGGGTCAGCATCTCCTGGCTTTAGTTTCTGGTTTCTCTGTGATCAGTGAGAGAGGGTTTGCCATGTGGCTGGCCATCACtttgataaaataaaaaaagtcttCTTTGAACTGTTACAGTGTGTCATGCCCGCAAGAGGCATGTGATATTGCAGGTTTATTTCTTAGCACATGTTGTGAATCATTTTTGACATTTTATTATTGTATCTGCGCCATATTAGTTTTGGTTTCTGTTATTTTTTCAACGATTCAAGATGTATTGTAAATGTTTCtaataaaacaaaaatgaaatTGTTTCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270716 lncRNA upstream 7466 24291997 ~ 24292241 (+) True G236871
TU270614 lncRNA upstream 38413 24259083 ~ 24261294 (+) True LOC110514864
TU270689 lncRNA upstream 75501 24223979 ~ 24224206 (+) True G236844
TU270687 lncRNA upstream 77059 24222273 ~ 24222648 (+) True G236842
TU270683 lncRNA upstream 83900 24215381 ~ 24215807 (+) True G236838
TU270729 lncRNA downstream 31102 24344514 ~ 24344753 (+) True G236884
TU270764 lncRNA downstream 87208 24400620 ~ 24483407 (+) True G236919
TU270786 lncRNA downstream 121226 24434638 ~ 24455342 (+) True G236939
TU270821 lncRNA downstream 187817 24501229 ~ 24501489 (+) True G236974
TU270824 lncRNA downstream 191230 24504642 ~ 24504902 (+) True G236977
XM_021594024.2 mRNA upstream 40160 24226912 ~ 24259547 (+) False LOC110514864
XM_036972869.1 mRNA upstream 40160 24226912 ~ 24259547 (+) False LOC110514864
XM_036972877.1 mRNA upstream 40160 24226912 ~ 24259547 (+) False LOC110514864
XR_005041909.1 mRNA upstream 92078 24204483 ~ 24207629 (+) True LOC110505138
XM_036972815.1 mRNA upstream 115451 24105520 ~ 24184256 (+) False LOC110503950
LOC118947812 mRNA downstream 29150 24342562 ~ 24352353 (+) True LOC118947812
XM_021594156.2 mRNA downstream 398071 24711483 ~ 24718629 (+) False LOC110515127
XM_021594172.2 mRNA downstream 504163 24817575 ~ 24819244 (+) True LOC110515164
XM_036973022.1 mRNA downstream 534115 24847527 ~ 24876184 (+) False LOC110503966
XM_036973032.1 mRNA downstream 534118 24847530 ~ 24876184 (+) True LOC110503966
TU270587 other upstream 244040 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 370620 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 504512 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 435993 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 452254 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 461867 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 881875 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1227357 25540769 ~ 25541613 (+) True G239026

Expression Profile