RNA id: XM_021594060.2


Basic Information

Item Value
RNA id XM_021594060.2
length 2617
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110514944
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24313555 ~ 24323816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCAAAGGGCGGGGCTAGAGACTCGACGTTACGTCGCTCGGAAATGGCACATTACAAGTGGTCGGGAAGAGGAGTCGAAAGTTTGTGAAAGATAGTTTGTTGTCTTTCAAAATTTCACAGTCAAATAGGATACATATAATCGAATAATATATTACAGGTGTTGATATAGTGCGAATGTACCTTTTTGACTCTGTTGTTCGTTCTAAGGAAGCGGTCGGTCGCGAGATAAATGGTCAAGAAGTTTTGTCGAATTGAACAGAAACGACCACGGGAGGGTTTGaacatttcacatttccataggTAGAAACGTTGAAGAAATGACGAATAGAGAAGACGAATATGACTATCTTTTCAAAGTGGTGCTGATTGGGGACTCTGGAGTGGGGAAGAGTAACCTGCTGTCCCGCTTCACCCGCAACGAGTTCAACCTGGAGAGCAAGAGCACCATTGGGGTGGAGTTTGCCACGCGCAGCATCCACGTGGAAGGCAAGACTGTCAAGGCCCAGATCTGGGACACGGCAGGACAGGAGCGCTACAGAGCCATCACCTCAGCGTACTACCGTGGGGCAGTGGGGGCTCTGCTGGTGTACGACATCGCCAAGCACCTGACGTATGAAAACGCTGAACGCTGGCTGAAGGAGCTGCAGGACCATGCTGACAGCAACATCGTCATCATGCTGGTGGGCAACAAGAGTGACCTGCGCCACCTCAGGGCTGTGCCCACGGATGAGGCCAAGGCCTTGGCAGAGAAGCATGGACTGTCTTTCCTGGAGACCTCGGCGTTAGACTCCTCTAATGTGGAGCTGGCTTTCCAGACTATTCTCACAGCCATCTACAACATTGTGTCCCAGAGGCAAATGACGGGCCGCAGCGACGCCGACTTCTCGCCCAACTCCAATGTGGTGCCGATCACAGTGCAGCCCACGCAGAACGCTGCCAAGTCAAGTGCCTGCTGCCAGAACAACTGAGGCCTCACCACCGTCAGGGACAGACGAGTAGACGGAGAGGGAGGACTGGGAGACAAGGAGGAGAAACCTAGAGACAAGGATACAGGCAGACAGAAACAAGTGGAGAGATACAcagggagacagaaggacagggaGACCAAGGGGGCAACCAAGTGTTTCCATAGCCTCTATGCATTGTTTCCTCTGAGAAGTCTGTCCCCATCTAATTCAATAAGCTTTATGGTTATGCCTTGGCTTGATTGGTTTTAAATATGAAAGAGGACATGAATTAATTTACATGAATTGAGAAATTTAGCATGTTTGGATATGGTCCTCCATATCTTTCCACAGTTTGTCTCACTCATTGtgaactgacccccccccccccccccaccattgtCAGATCAATTTAATAAGCCTGTGAACGCACCCAATTCCCCAGCACAGAGAAGGGGCAATAAGATTCGGCAGTGAAGACCTGATTTCACTGAAATGTAACCCCCACCTCTCCATTGTCAGGCAGCTCCTCCCAAACATATTTCAGTTTGTCCCAATTATATTTATTTCACACTATATTGAGGTCTTGTTTGACCAAAGGGTTTGTGCTAACATGCAACACTGGGTGGGTTTGATCTGAAGCTGCTTACTATATATGACGGGTGTCCTCTTTTTGTTCTTGATTTCACTGGTAATCAAATCCTTTTATGATATAGTTATTAAATGTAACTACTCTTGGCTAATGGGGAACCGAGGAGTTAAGCCATCTTATCCCAAATGTTCCTGGTCGAATGTCAGGCCAATCTAAACTGCACAAAATGGGGGTCCGTGGAGAACTTTTCATGTCCATTTTATCAGTGCTCTTCGACTTCCCTTTTAGTCTTTACACAAAATAAAGTTTGCTCTTCAGATTTTTTTGTGATCAACATTTTCCTCCCTGTTGAAACTCATTACAAAGTACTTTGCACAGCAATATTTCTCACATAGGCCTATTCTTTGTTAGCAAAAAAGACAGTCTAGCTCTTTTGGGTGTTATCCTTTTATCACCGTGAACCATCCTTTTCCGGTTTAACTGAATTGCTGTCGCTTTCTCCGTGACTGTGGAGATATGTGAGGGTGATGAGGGGATATTGGTTGGAGTGGTGGTCATATACCATGGTCTGAGTGGAGCCCTCCCTGCGGCCTGCTGTCCTAGATGGCTGGACAGCTCATGTTGCAAGAGATGGGTAGTAAGGGCACTCAGCCCTGCTGCTTCTCTGATGTACACAAGATGGCTTGTTTTACTGTAAATGAACTCCTCCACTGTATGTAACTGGAACCGTATCATGCCTTCTGGGATATCCCTTAAGAGTTTCCCAGGTCTCTTTGTATGGTTATATTTTCTCTTTTTTCTGGGTGTGTGTAGTTCTGTTGGTAAGAGTAAGCACTAGGGAGGATACTAGCCCTTCTAGATCTGCTAGTTTGGCAAAAGAGGGGAGGTGTGGGGAAAGTTTGAGGGTGCCATTACCACAGCCGAAGGTCAACAGTGTAAACAGTCATTATCCTGCTGAGTTTTTTTTTCCCTTGTGGCATTCCCAGTAGTAAATTGGGATGTAAAGGTTAGGTTTTTAAAATGTTAATTCTCATGTGTACATTTTAGATTGCACATgtataaataaatgtaatttctTAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07904 RAB11A; Ras-related protein Rab-11A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271659 lncRNA downstream 4544 24305682 ~ 24309011 (-) True G237723
TU271638 lncRNA downstream 12902 24300193 ~ 24300653 (-) False G237714
TU271637 lncRNA downstream 12902 24300247 ~ 24300653 (-) False G237714
TU271640 lncRNA downstream 12943 24300193 ~ 24300612 (-) False G237714
TU271639 lncRNA downstream 12943 24300247 ~ 24300612 (-) True G237714
TU271668 lncRNA upstream 25290 24349106 ~ 24349359 (-) True G237732
TU271765 lncRNA upstream 190295 24514111 ~ 24514321 (-) True G237828
TU271766 lncRNA upstream 191379 24515195 ~ 24515433 (-) True G237829
TU271777 lncRNA upstream 202968 24526784 ~ 24526988 (-) True G237837
TU271778 lncRNA upstream 203484 24527300 ~ 24527563 (-) True G237838
XM_021594042.2 mRNA downstream 26937 24259081 ~ 24286618 (-) True LOC110514890
XM_021594039.2 mRNA downstream 30756 24259081 ~ 24282799 (-) False LOC110514890
XM_021594020.2 mRNA downstream 91828 24217505 ~ 24221727 (-) True gpatch4
XM_021594018.2 mRNA downstream 91844 24217505 ~ 24221711 (-) False gpatch4
XM_021594009.2 mRNA downstream 114742 24189209 ~ 24198813 (-) False LOC110514831
NM_001160633.2 mRNA upstream 7710 24331526 ~ 24336143 (-) True mapip
XM_021594051.2 mRNA upstream 12908 24336724 ~ 24342873 (-) True LOC110514914
XM_021594076.2 mRNA upstream 37667 24361483 ~ 24373454 (-) False LOC110514995
XM_036972913.1 mRNA upstream 37667 24361483 ~ 24378365 (-) True LOC110514995
XM_021594071.2 mRNA upstream 49985 24373801 ~ 24378081 (-) True LOC110514973
TU271573 other downstream 129591 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 130001 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 533420 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1124524 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1738566 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 197403 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 445746 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 445888 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 612700 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 612851 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile