RNA id: NM_001160633.2


Basic Information

Item Value
RNA id NM_001160633.2
length 889
RNA type mRNA
GC content 0.43
exon number 4
gene id mapip
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24331526 ~ 24336143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTTGAAGGGGTCAGCTGACTGGATTGTTATTGAAGAAGTCACTGAACTGGGTGATAATATACATTTCATCATAATTTCGCCTAAATTAATCGAGTTGCTGCAAAGTATTGCTCACTCCAACCATGTTGCGGCCAAAAGCATTGACGCAAGTTCTCAGCCAGGCAAATACAAGCGGAGTACAAAGCACACTATTGTTAAACAATGAAGGGTCTCTTTTGGCTTACTCTGGCTATGGGGACACTGACGCTCGAGTGACCGCTGCCATCGCAAGCAACATCTGGTCGGCCTATGACAAGAATGGGCATCAAGCTTTTAACGAAGATAAACTCAAATTCATTCTGATGGATTGCATGGAAGGCAGGGTGGCCATTACACGGGTAGCTAACCTACTGTTGTGCATGTATGCCAAAGAGACTGTGGGCTTTGGAATGCTTAAAGCCAAGGCTGAAGCACTGGTGCTTTATCTGGAGGAACCTTTAACCCAAGTTGCTGCATCATAGGGGAAGTCTGGCTGGAGCGTTGTCTTCCATTTTGTCTCCCCTGAACATACATGAACTCTTATTGCTGATGTGAATGCTTTACCTGGTCTTCATGAACCACTGCAGTCTGTGTATCAATGAACTGAGTATTTATCTTCTGATTACTATATTTATACTCAATATGCTCTAACTTAATGCTTGAGTTTTTAGTAATTTGGCCTTTTGTGGCATGCAGTTCAAACGTCAAGCTCATACTTTGTGTAAGGCTGGCTAGGTAAATCTTTGAGATTCAAGAGGACTGCTGAAAATGCTGACACATTAACGTTAAGGCATTCACTGTTTACCCTAGTCAGAATCTTACAGTTGTCTGTTCCTGTCACGCAATAAAATGTATGATATCCCTTTG

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0034613 cellular protein localization biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0016049 cell growth biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K20398 LAMTOR2; ragulator complex protein LAMTOR2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271659 lncRNA downstream 22515 24305682 ~ 24309011 (-) True G237723
TU271638 lncRNA downstream 30873 24300193 ~ 24300653 (-) False G237714
TU271668 lncRNA upstream 12963 24349106 ~ 24349359 (-) True G237732
TU271765 lncRNA upstream 177968 24514111 ~ 24514321 (-) True G237828
TU271766 lncRNA upstream 179052 24515195 ~ 24515433 (-) True G237829
TU271777 lncRNA upstream 190641 24526784 ~ 24526988 (-) True G237837
TU271778 lncRNA upstream 191157 24527300 ~ 24527563 (-) True G237838
XM_021594062.2 mRNA downstream 612 24320744 ~ 24330914 (-) True LOC110514960
XM_021594060.2 mRNA downstream 7710 24313555 ~ 24323816 (-) True LOC110514944
XM_021594042.2 mRNA downstream 44908 24259081 ~ 24286618 (-) True LOC110514890
XM_021594039.2 mRNA downstream 48727 24259081 ~ 24282799 (-) False LOC110514890
XM_021594020.2 mRNA downstream 109799 24217505 ~ 24221727 (-) True gpatch4
XM_021594051.2 mRNA upstream 581 24336724 ~ 24342873 (-) True LOC110514914
XM_021594076.2 mRNA upstream 25340 24361483 ~ 24373454 (-) False LOC110514995
XM_036972913.1 mRNA upstream 25340 24361483 ~ 24378365 (-) True LOC110514995
XM_021594071.2 mRNA upstream 37658 24373801 ~ 24378081 (-) True LOC110514973
LOC110515008 mRNA upstream 52898 24389041 ~ 24391115 (-) True LOC110515008
TU271573 other downstream 147562 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 147972 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 551391 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1142495 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1756537 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 185076 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 433419 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 433561 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 600373 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 600524 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile