RNA id: XM_021594051.2


Basic Information

Item Value
RNA id XM_021594051.2
length 3739
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110514914
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24336724 ~ 24342873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCGAAATGCGAAATGCCACGTCTGGTACaccattacgaaacttctatttgatcaaataatcCTCACATAGCAAATAAAATATACAcatttttgttgaccaaattcgacacttaATGACCATACAAACAAATCGTATtttcgtggacagattttgggctgagtaaaacctctcgcttcacctcttcctctctggatgTAGTGAATTTGAAGAGGAGTAAAGATGGCGGAGAACAGCGGCACAGATCCCACTGTGGATTCCAACGTTGTTGAAAATGCTGCCTCAGACGGGACCATGATTGTGGTCACGGTAAAAACTCCGAAAGATAAAGAGGAGATCGCGATATCGGAAGATTCTTCTGTCGCACAGTTTAAAGAGGAGATATCCAAAAGGTTTAATGCCAAGCAGGACCAGCTGGTGTTGATTTTTGCTGGAAAAATCTTAAAGGATGGAGACACACTGAACCAACACGGCATCAAGGACGGACTCACTGTTCACCTAGTCATCAAGACTGCTCCCAAGGCTACAGTTGGTGGCACATCCCAGTCCTCGGCATCCAGCTCTGGGACCCCCCAGGCCAACAGCAGCGTTAACCCCAGCGCAGCGCCCAATGACAGCACAACACCAGGCACTGGGCCTACCCCAACCTCCACACAGCCACCCAACTTACTGAGTGGGTTTGGTGACCTATCTAGCCTGTCAGGCATGGGCATGGGCTCGGCCAACTTCATGGAGATGCAGCAGCAGATGCAGAGACAGCTGATGTCCAACCCGGAGATGCTGTCTCAGATCATGGACAACCCTTTGGTGCAGAACATGATGTCCAACCCAGACCTGATGAGGCAGATGATTGTGACAAACCCTCAGATGCAGCAGCTGATGGAGCGCAACCCTGAGATCTCCCACATGCTCAACAACCCTGAACTTATGAGACAGACCATGGAGTTGGCAAGGAACCCAGCCATGATGCAAGAGATGATGCGTAACCAGGACCGGGCGCTTAGCAACCTGGAGAGCATCCCTGGGGGCTACAACGCCCTCCGGAGGATGTACACAGACATCCAGGAGCCTATGTTCAGTGCCGCTAGAGAGCAGTTTGGAAACAATCCCTTCTCTGCTTTGGGGGGCAACTTGGACTCTGGCGTGCAGCCCTCCAGAACAGAGAACAGGGAGCCCTTACCAAACCCCTGGGGACCCCCTGGAACGACCCCCTCAGAGATCAGGGGGACTGGTGCCTCCACGACAACAACAACCTCTGCTGGCGGGACTGCACCCAGTGCCTCCAACCCCCTGGGCATCAATGCCTCTGGGCTGGGCAACGGTGTGTTCGGTAGCCCTGGCATGCAGAGTCTGATGCAGCAGATCTCTGAGAACCCCCAGCTGATGCAGAACATGCTGTCTGCGCCCTACATGCGCAGTATGATGCAGTCGCTGGCGCAGAACCCTGACCTCGCCTCGCAGGCAATGCTGAACAACCCCCTCTTTGCCGGAAACCCCCAGTTACAGGAACAGTTGAGACATCAGATGCCGGTCTTTCTCCAACAGATGCAGAATCCTGAGTCACTGTCTGTGATGACTAACCCCCGGGCCATGCAGGCTCTCATGCAGATCCAGCAGGGCCTGCAGACCCTACAGACGGAAGCCCCAGGACTCATGCCCAGTTTGGCTCCTGGTGGGATCCCAGTGATTCCTCCAACCACAGGAGGCAGTGTGGCCCCAGAAAATCTTCCTCCCCCAACACAGGGCTCAAATCCCACTGCTGCCACTAACCCAtcccaacagcagcagcagctcatGCAGCAGATGTTACAGATGTTTGCTGGAGGAGGAGGCGGCTCATCGACCCAGACCGTAACCCCGGAGGTGCGGTTTCAGCAGCAGCTGGACCAGCTCAGCGCCATGGGCTTCATCAACCGTGAGGCCAACCTGCAGGCCCTCATCGCCACGGGGGGAGACATCAACGCTGCCATTGAGAGACTGCTGGGCTCCCAGCCCTCCTAACTCTCTTAGCCCCCTGAGATTactgggagagaggggttaggTAGGGGTGGTGAGGGCTGGAGTGGGAGTTTACAAATGAACACAGTCCTTCATCACAGTCTGACAAGCCCCTCAGATAGACTCAACTGAATTCCAATTACTATTCATCTCTTTGGCTGATCTGTGAAAAGTAGGAAAGATATGGGGGCAGGAAGTGGGTGTTCAGATTCAAGTTTCTATTGGAGAGATCTCATATCAACCCTGTGGAATGATGACATCGCTGCAAAATGACGCCACCACTAACATGACTACTTCCTCTGTTGACTATGGGAGATTATTTCTGAAATGACTGCCCATTTGCTGGACATGCATGAGGTTGCCGACTTAACCCATCTTAATGGATTGTGTTTAGCCGGTAACGAGTTGAAATTTGGAGGAATATGAGTGTTGAAATCATAGGTCAGAGGAATCACTCATTCTTTCATTGTCATGAGAACCTGCTTGTTTTTACTTAATTTCACTCTATCATGCCTGATTGACTAGTATTTATTACAGGAGCTGTAGAAGTTACCTTCTCTTTTCTTTACCACTCACCTTCAGTTTACCTTCTGCTTTAATCATTTCTTGACATCCTTCAAAACTGATCCTGGCTGTTGGATTCTCTGTTTGAGCACTATAGCGCCCCAGGTTCAGCTGTTTGCTTACACTTTCAGCTTTTTTGGAAGGGATGATTTTCAGGTTGGAAGGTCAGGCAAGGTAGCTTGGTGAGCTCTGTAGTTAATGCTACATTGAGTCAATGAATGCTATTGAGTGTAAATTATTCAACCGTTTAGGCTCTGATTATGGGTTGTGATAAGACCTCAATGTTTTAATCTGAGCAATGATAAAAATGCAGACACCTTTTACGTTAACCATTTTGTGTATTTTCATACAAGCAGCGGTTTAGTGCCTgataaaaatgtatgtattggGTTCAGCAATATATTCCAAAATAATTTGTGAaatctataatgacaaagtgtacTAATAGCATAGAGAATAGTTTTTCTTAAACCCATACATATTAGTTGCAGTACCTACAGTTAAAGAACATCTGTTCAGCGCTGCCTTTTTCTTGGAGTCACTCTGTTATCTATTCTAATAATACCTTTCAAGAAACATGATCAAGTGTGTGGTGGTCATTCATTTAGTTCAGAAGCATGGTCTACACCAGTAGTCTTCACTCCTGATCCTGGAGGGATGCACCCTATGCTGAATTCAGATTCTCAATCCTCAAAATGCACACTTGTTCACCCCACCTCAGATTTAAAAGCACTGGACTGGACTGCAGTGAGAAATGTGGTGGAAACTTAATTTAGCCCAAGCTTACGCCAATCCGCACCCTTTTGGCAAAGTGAAATTGGAATTGAGTGCAAGCCCAGCGCAAACAGATGTGATTCAGCTATTCATGATCTTGATGAGTAGTTAATGTTGCAGACTTGGCCTGTTCACACTGACTGCAACCCCCTAGGACCAGGTGTGATTAACACTAGTCTACATTGTGTATGTTATGAAATTATATGAACTTGATATGGATGATTTGTTCAACTTGTATGGgaattgtgtgtagtttgagagGTGGGAAAGTTATAGTGGTGACCATGCATATTTGGTAGATCATAAAAGGACCAAGCTTGAAAATATAAATTGTGAACTGAAATAAACATTGAAATATCTTAATGGCAATTAAGCATTAAGCTGTTTTAACATTCACCAGAGA

Function

GO: NA

KEGG:

id description
K04523 UBQLN, DSK2; ubiquilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271659 lncRNA downstream 27713 24305682 ~ 24309011 (-) True G237723
TU271638 lncRNA downstream 36071 24300193 ~ 24300653 (-) False G237714
TU271668 lncRNA upstream 6233 24349106 ~ 24349359 (-) True G237732
TU271765 lncRNA upstream 171238 24514111 ~ 24514321 (-) True G237828
TU271766 lncRNA upstream 172322 24515195 ~ 24515433 (-) True G237829
TU271777 lncRNA upstream 183911 24526784 ~ 24526988 (-) True G237837
TU271778 lncRNA upstream 184427 24527300 ~ 24527563 (-) True G237838
NM_001160633.2 mRNA downstream 581 24331526 ~ 24336143 (-) True mapip
XM_021594062.2 mRNA downstream 5810 24320744 ~ 24330914 (-) True LOC110514960
XM_021594060.2 mRNA downstream 12908 24313555 ~ 24323816 (-) True LOC110514944
XM_021594042.2 mRNA downstream 50106 24259081 ~ 24286618 (-) True LOC110514890
XM_021594039.2 mRNA downstream 53925 24259081 ~ 24282799 (-) False LOC110514890
XM_021594076.2 mRNA upstream 18610 24361483 ~ 24373454 (-) False LOC110514995
XM_036972913.1 mRNA upstream 18610 24361483 ~ 24378365 (-) True LOC110514995
XM_021594071.2 mRNA upstream 30928 24373801 ~ 24378081 (-) True LOC110514973
LOC110515008 mRNA upstream 46168 24389041 ~ 24391115 (-) True LOC110515008
XM_021594088.2 mRNA upstream 57831 24400704 ~ 24409697 (-) False LOC110515020
TU271573 other downstream 152760 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 153170 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 556589 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1147693 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1761735 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 178346 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 426689 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 426831 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 593643 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 593794 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile