RNA id: XM_036972913.1


Basic Information

Item Value
RNA id XM_036972913.1
length 1837
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110514995
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24361483 ~ 24378365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTCCTGTTGGAatgcagagaggggatggaggagttCCAACGGGGGAGtgacgagggagagagacagagagagagacagagaagagagagagagactacatatACATCCCAACACTAGGAGGCTGGTGCTCAGAGGCACAGTTGGACTGTTGGATAACTAGACTGCACCCCCCTGTATACTTTATTGGACTATCAGAGtTCTCACTGTGAGGCCAGCAGGGATTCACTCTAGTTGAGAGTGTGAGCAAGGAAGCAGGCCACCGTCCAACAATACCTGAACAGCTCTACATGTTATACTGTTATTTGTTGTGCACTGAATAATAACAATACCAGCAAAGATGGCCGGCCAGCTACAGAAGATCGTAGCAGAGAAGAAGAACGTGGTAGAGACTGTAATGGAAGTGTTTGAACAGGGAGCTGAGGTGGTGGCCAGTATCGCAGGTGACCTCTTCCCTGTTTTCGCCATCGCTGCTCCCATCGTGAAATTGGCCCTGGACAATGTGGAGAGCAAGGAAGCTGCGTTCATGAAGGAGCAGTTCCAGAAAGTTCGTGAACGCCTGGAGGTGGTTTCAGAGGAGATGCAGCGTATTAACGAGGAGATCAAGAAGAGCGGAGCAGACGCTGCCTACTTTTCTGTAGAGGAGAACATCTCCAACCAGTTCCGCAAGTACATGGACATCCTCAATGCCAAACCCAAGTTTCGTGAGGTCAAGAAGAAGCTTTTCATGGAGCATTTTGTCAAAACAGGTGGCGACAAAAACCTACACACCCTCTATAGTGCCGTGACGGGAGACAACTTCTCTGGAGAGTCAGTGTTGGAAATTACTCTTAACTATGAAGAGAAAAGTCGACGCGCAATGGAAGACTTCTGTGCCAGGTTGAAGAAACTCTTTTGCATAGGCCTCATCGCTCTGATGGGCTACACCGCTCTAAAGGACTGCGATGACGAAGAGAAGCTTCTTCAAGACTGGGGTGAAAAGATGAAGGATGTACAGGTGAAAATGAATGCTGTCATTGAGGACTGCATCACCAGCTTCCCCAAGCAGTCTGAACTGGATTCCCGGAGGTTGGTTAGGGACCATTCTGACCTGAGCAACCAGCAGCTGGCAGACGCCATTTTGGAGAAGCTGAAAAGAAAGTATGACTGGGTGTGCTGGTCTGTCCGTATATTCAGCTCCCCTTCGGGCCTGTTCTCCAACAAAAAAGACATCCAGTGCCCCACAGGAAAAAATCGCTTTCAGGTGCCAGCGACAGACGAGAAGCTGAACGTCATGGTCTCCTACAGTGCCTCGCCCGAGCCTCTGAACAAGGCCCACATCCAGCAGCTGATCCAGGGTCAGAAGAAACTCACCGTAGTGGGTACAGCTGAGCTCCTGTTTGAGCAGTTGCCAGGTCCATGTGCAGTCCACACGGTCAAGACTTGCAAAGACCTGGCCTGTGTCTGGAGCTTTGCCGAAGAGCTACACTACTGGGAGGAGCACAAGAACTTCTATGTTTGTGTTCACTACAATTGACTTTTTCTTACTTAAAAATGAATTAATAATTAGCCTTAGCTCCCAATGTTATATTCAGTCCAATTTGATCTTTACACTAAGACTGACATTGCCAagtactttctctctttctcagttgAGTTCTGATCCCCAGCTATACTAATGAGGAGGAACATAGGCTAACATTTATTATAAGGCATGATACTTACCAAAGACTGTTTTACCTGTTAATCTATTCTTTGTAATGTTTTTCTTTTATGTATGCCCCCTACTAAAATAGTGTAAATAAAATCTGCTTGACATGTTCAAATAAACCACACATAATAACTGTGATAGTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271668 lncRNA downstream 12124 24349106 ~ 24349359 (-) True G237732
TU271659 lncRNA downstream 52472 24305682 ~ 24309011 (-) True G237723
TU271637 lncRNA downstream 60830 24300247 ~ 24300653 (-) False G237714
TU271640 lncRNA downstream 60871 24300193 ~ 24300612 (-) False G237714
TU271765 lncRNA upstream 135746 24514111 ~ 24514321 (-) True G237828
TU271766 lncRNA upstream 136830 24515195 ~ 24515433 (-) True G237829
TU271777 lncRNA upstream 148419 24526784 ~ 24526988 (-) True G237837
TU271778 lncRNA upstream 148935 24527300 ~ 24527563 (-) True G237838
TU271780 lncRNA upstream 150109 24528474 ~ 24528781 (-) True G237840
XM_021594051.2 mRNA downstream 18610 24336724 ~ 24342873 (-) True LOC110514914
NM_001160633.2 mRNA downstream 25340 24331526 ~ 24336143 (-) True mapip
XM_021594062.2 mRNA downstream 30569 24320744 ~ 24330914 (-) True LOC110514960
XM_021594060.2 mRNA downstream 37667 24313555 ~ 24323816 (-) True LOC110514944
XM_021594042.2 mRNA downstream 74865 24259081 ~ 24286618 (-) True LOC110514890
LOC110515008 mRNA upstream 10676 24389041 ~ 24391115 (-) True LOC110515008
XM_021594088.2 mRNA upstream 22339 24400704 ~ 24409697 (-) False LOC110515020
XM_036972935.1 mRNA upstream 22339 24400704 ~ 24498985 (-) True LOC110515020
XM_036964700.1 mRNA upstream 104871 24483236 ~ 24484420 (-) True LOC118944659
XM_036972942.1 mRNA upstream 187348 24565713 ~ 24576356 (-) False LOC110515051
TU271573 other downstream 177519 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 177929 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 581348 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1172452 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1786494 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 142854 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 391197 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 391339 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 558151 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 558302 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile