RNA id: XM_036964700.1


Basic Information

Item Value
RNA id XM_036964700.1
length 1185
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC118944659
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24483236 ~ 24484420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACAGAATGTGTGGAAGAATGGCTCCTGCAGAACAAGGACAATTTAGAAAAGGGGATTGATATCATAGGACAGGCGTCTGCGATCCTGGCAGTCACTGTGGGCCAGTTCCATCCCATCCTGGAGGCTGTATTCCAAGCATCCTATGAGATCTTCAGCAACCCAGAAGGACAGAACGCCAAGTACCTGACTGAGCAGTTCTTCAAAGTCAACCAGAATTTGAGACGCATCCAGGCTGAGGAAGACCAAATCTCCCGGGAGCTGCAGAAGAGCTCCTTGAATAAGCAACACTTTGACTGGGAGGCACAAATTCTCAACCAGTACAAGAAGTTTGAGGAGTTTTTCAATGCCAAACCCaacttaaaaaaagaaaaaatggaCGAATTCCTCTTAACTTATGAGGTCTTGGAAGAAGACTTGAACCTGGATGCCCTCTACAATGCTTTTACTGGGAATGCCTCAGGTGGCTCCATGCTGCAGACAGTGGTTGAAACAGAACAATTTAATAGAATTGTGGTAGAAGATTTCTGTGATATTCTTAAGAAGCTCTTTGTGAAGGGCATCATTGCCTTCATGGGTTACAACAGCCTCAAGAAAAAGGATGTGGGGTATCAGATGCTGAAGAAGTGGCTTAAGCAGATGGAACAAGTTGAGGAGAGCATGAAAAAAGTGATTGATGATATCATTGATAACTTCGCCCCAAGAGCTAAAGAGGACATGGTAAAACAGCTTGAGGAGATACCTGGCTCTGTTGACCTTGGCTTCACCAAATCCATATTGGACACCCTTAAGAATAAATATGACTGGGTGAGCTGGTCTATCAGGGTCTTCAATGACAAGGAGCGCATTTTCTTTTTCAACTGGCTAGCTGGAAAGAAGTACCATGGCAGTGAAGGAGGAGCTAATTTCTTTGAGGTGATGACCAAAAACAACATCAAAGTGGTGATCTCTTTCAGTGTTCAACCTAAGCTTATCAACATGGATCTGATCAAAGAACAGATTGAGGGGGAGAAGCTGAAGAGGAACATGATGGATGTGGCTCAGATCGTCAGCAGAAGACTCCCCAACTGCCAGGTGCATGCTGTCAGCGCCTATAAGAAAGTGGTGGAGAGCAACAACTTCAAAGAGGGTTGTTACTACTATGgaaaacaccaaaaagtgtacATATGCGTTCATCCTAATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271668 lncRNA downstream 133877 24349106 ~ 24349359 (-) True G237732
TU271659 lncRNA downstream 174225 24305682 ~ 24309011 (-) True G237723
TU271637 lncRNA downstream 182583 24300247 ~ 24300653 (-) False G237714
TU271640 lncRNA downstream 182624 24300193 ~ 24300612 (-) False G237714
TU271765 lncRNA upstream 29691 24514111 ~ 24514321 (-) True G237828
TU271766 lncRNA upstream 30775 24515195 ~ 24515433 (-) True G237829
TU271777 lncRNA upstream 42364 24526784 ~ 24526988 (-) True G237837
TU271778 lncRNA upstream 42880 24527300 ~ 24527563 (-) True G237838
TU271780 lncRNA upstream 44054 24528474 ~ 24528781 (-) True G237840
XM_021594088.2 mRNA downstream 73539 24400704 ~ 24409697 (-) False LOC110515020
LOC110515008 mRNA downstream 92121 24389041 ~ 24391115 (-) True LOC110515008
XM_036972913.1 mRNA downstream 104871 24361483 ~ 24378365 (-) True LOC110514995
XM_021594071.2 mRNA downstream 105155 24373801 ~ 24378081 (-) True LOC110514973
XM_021594076.2 mRNA downstream 109782 24361483 ~ 24373454 (-) False LOC110514995
XM_036972942.1 mRNA upstream 81293 24565713 ~ 24576356 (-) False LOC110515051
XM_021594113.2 mRNA upstream 81293 24565713 ~ 24576372 (-) False LOC110515051
XM_036972936.1 mRNA upstream 81293 24565713 ~ 24576410 (-) True LOC110515051
XM_021594134.2 mRNA upstream 118201 24602621 ~ 24619117 (-) True LOC110515085
LOC110505156 mRNA upstream 161939 24646359 ~ 24647543 (-) True LOC110505156
TU271573 other downstream 299272 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 299682 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 703101 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1294205 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1908247 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 36799 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 285142 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 285284 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 452096 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 452247 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile