RNA id: XM_021594134.2


Basic Information

Item Value
RNA id XM_021594134.2
length 3721
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110515085
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24602621 ~ 24619117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATTCTAACTATGATTCTCAGAGATGGGACAGACAGCCGACGGGTGAAGTACATGTTTGGCAAAGATATCTGCTTGTGAACATACTGCATCTACCACAGAGCACTCCATCCATGGTTTATCGACATTTCTATTCAGACCTCATCGTGGCGCACAACATTAGAGGAACGAAAGTAACGTTTATTTTGGGATGATCCGTATGATTTCACTAGATAACTTCGATCACATAATTGCGTAGAACTGTGGTCAGTATTGTGTTTTTGTGATTGAGAGAATATTTTGATTTAGTTCAGTTCGAATATTAAGCAGAATAAGATTCTAGGCAGTCGATATTCATGAAAATGACACTTTAACGACCACTTCTCCATTCTGTACATGCTGTATTGTTAGTCGACTTTTCAAATACAATCAACGTTTTTGAGAGAGCGTGTTTATGGATTTCTGCGCAGAGCAGAACACTGGCAGTAGCCTCCATTCTTACGCAATAGTCATGTTGATACCGTGCTGTCTTCGTAAACTTTGATAGAAGTTTACAGAAGATACGTTTACGACAGGGACATTTGATTAACTAGAGAAAATCAATTTGATAATATATTAAATACTTTTTGGAGGAAGTGGGAAGCGCCTTTTCGCCCTGCCTTGTTTTCCCAAGACGTCAGAACGGATTCTTATCTCCTCCCCGCGCTACGGAGTTGGACTCGTATCTGTTGTCTAACCAAATTGTTTTAGGATAGCATGGCAATGGTAGTAAACCAGTGGCAAGAGAACATTTCGGCGGATCCCGGGTCCCAGCTCCAGATTTGTAGTCAGGAGCCTGGCGGGACACCGGGAACCCCCTCTGGTTCCACCCCGGGGAACGATGCACTTTCCGGGGACAAGATTCCCAACGTGGACTGCATGGTGTGCGGGGATAAGTCCAGTGGCAAGCATTACGGTCAATTCACCTGCGAGGGCTGTAAAAGCTTCTTCAAGCGTTCGGTGCGACGGAACCTCAGTTACACATGCCGGGGGAACCGCGACTGTCCCATCGACCAACATCATCGGAACCAGTGCCAGTACTGCCGATTGAAGAAGTGCCTCAAAGTCGGCATGAGAAGAGAAGctgtCCAGAGAGGCCGCATGTCCAACTCCCAGTCTAGCCCGGGTCAGTACCTGACCAATGGAAGCGACCCTTACAACGGGCAGCCCTACCTATCAGGATTCATCTCTTTGCTGCTGCGCGCCGAGCCTTATCCCACGTCCCGCTACGGGTCCCAGTGCATGCAGGGAAACAACCTGATGGGCATCGAGAACATCTGCGAGCTGGCCGCACggctcctcttcagcgctgtggAGTGGGCCAAGAACATCCCCTTCTTCCCTGACCTGCAGCTCATGGACCAGGTGGCGCTCCTGCGCATGTCATGGAGTGAGCTGTTTGTGCTGAATGCGGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCCCTGCTGGCGGCGGCTGGCCTGCACGCATCGCCCATGTCTGCGGAGCGCGTGGTGGCGTTCATGGACCACATCCGGGTGTTCCAGGAGCAGGTGGAGAAACTGAAGGTTCTGCAGGTGGACACAGCTGAGTACTCCTGCCTCAAATCCATCGTGCTCTTCACCTCCGATGCCATGGGCCTGTCGGATGTGGCCCACGTGGAGAGCATCCAGGAGAAGTCCCAGTGTGCCCTGGAGGAGTATGTGAGGAACCAGTATCCCAGCCAGCCCAACCGCTTTGGCCGCCTGCTCCTGCGGCTGCCCTCCCTCCGCATCGTCTCCTCGCCCGTCATCGAGCAGCTCTTCTTCGTGCGCCTGGTGGGCAAGACGCCCATCGAGACGCTGCTGCGCGACATGCTCCTCTCTGGCTCCAGCTACAACTGGCCCTACATGCCCGTGCAGCGCGACCGCCCCATCTCCCTCCACTACAATGAAAACGGGCCCTGAGGAGGACGAGTCGTCGGGTATTCAGCTCTTCATCCATCTTTCATCGAccatccctcaatccctccctccgtttatctcctccctccatcccctggaAGACCACCACCGTTCTGCCAAAAAGCAGACTGACCACCTCACCACATCCCTACCCCATTCACCAATCCAGCCATTCACATGCCTCTTCTCCAGGGGACCACGGCCAATAGAGAGACAAGGAGGCTGCCATGGCCCCTCCTACTTCGCCATTGCCACATTTGAGAGGTGACACTAGACGGGCCGGCTGGCAGAAGGGTTTTTGCGCCGttctcctgcagctctgtcggacTTACGCCGTTAAAGACGACTTTGTCAGTCTTGGACTCGACGCGGTGTTGGCTACTGGCGACGCAGTCACTCTATTGTCGGCACTGTGCTTGCATCTAAAGGAGACGTGTCCAAGAATCTCCACTGTATGGCGATTTAGAGCAAGGCCTTGGCCGATATAACTGCTTGACCGAGAGAGCCAGGCCAAAGGTTCTTCATCAACCAATAATTTTTTAATTAACCCGAAGCCATTAAAAAACAAATGCCAAATTTCCTTGGAATTTTCAGAAGacatttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattagcacTGTTTATAATGAGAGaaattcatgattgtgtccataTGTATGTCATTGACTCATAGACATCCACATTAAGGGGTATGTTGGGACTAGATCAGGTTCAGGttggggagacaggacagacaggacagacatgcCACTATCAGTAGGTAACAGAGAATCACTCCTCACCCAGGGCAAAACACCTATCAACAGTCTGTACCAAAGTGGAACATGGATATTAATTGTTTGGATTATCTTTGTGGTAGTGGTGACAAAAACACCTTTTGGTTTGTCTATAATTTGACCTTTTACTTGTATTTAGACGTCAGAGGGTGTGGGAAGTtgcaaaacaaatatatatttacaaaaatagGCACTTGCAATGTGAAACTATCCAGAACCCACACTTGACCCACTCCCATCATAAACACAGCACTGGTAGATTCTTCCTCAGCTGCCATTTTGAGGTCAAAACTACAGGGCCACTAACTGGTAATGGTCAGTGTACTTCCGCCACTGTTTCAAAGCAGAATATCATACAAGTATCCCTTCATAACATCTATATAATTCTGTCAAAGGAATGACATAACACATGCCAGTTAATCCCTGTTAGTTTCATGTCACaatcacaaaaaaaatgtaaattgttATGGAGCCTGGACCAATAAGCATTTGAAAACTATAGTTGTACTTTGCCTTAGAACAAGATTTTGTCACTGAGCATTTATTTTATGACTGTGCCATAATCTGAAGTTACCTGTTATGACAGGCAATATGTCCTCCATATGAGGCCACCTCAATTCAATTGTCATTCAAGCAGCATACTAGGAAATTGTATTACTAACCTCCAAATCTCAATTAAAGTTACAATGGTCATTACTGTGATTTAGCATAGATATTATTGTGTTTTTGTTACCATCAATTGATGACGGGCTGTAAGGCAACATTGATTGTTGGACGACCAGTCTGTTTTTTAACGTGGCACTGGGGTATCAGCAACAATTATTGGGATTTCAAAGCCATTGGGACCTTGGAGAGCAGGACTGTCTGTTGATAAATTTGTTCACAGAATATTTCTATAagagtatgtttttttttctctatttttgttTGGGAAAAATGGATCCATTAattgaaataaaaatgtgttgttcACA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0032526 response to retinoic acid biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271818 lncRNA downstream 42045 24560332 ~ 24560576 (-) True G237877
TU271804 lncRNA downstream 49641 24552693 ~ 24552980 (-) True G237863
TU271803 lncRNA downstream 50247 24552115 ~ 24552374 (-) True G237862
TU271791 lncRNA downstream 67760 24534558 ~ 24534861 (-) True G237851
TU271790 lncRNA downstream 70573 24531715 ~ 24532048 (-) True G237850
TU272307 lncRNA upstream 98621 24717738 ~ 24718558 (-) True G238315
TU272308 lncRNA upstream 100619 24719736 ~ 24719969 (-) True G238316
TU272237 lncRNA upstream 144589 24763706 ~ 24764733 (-) False LOC110515141
TU272238 lncRNA upstream 144589 24763706 ~ 24764471 (-) False LOC110515141
TU272245 lncRNA upstream 145695 24764812 ~ 24765362 (-) True LOC110515141
XM_036972936.1 mRNA downstream 26211 24565713 ~ 24576410 (-) True LOC110515051
XM_021594113.2 mRNA downstream 26249 24565713 ~ 24576372 (-) False LOC110515051
XM_036972942.1 mRNA downstream 26265 24565713 ~ 24576356 (-) False LOC110515051
XM_036972935.1 mRNA downstream 103636 24400704 ~ 24498985 (-) True LOC110515020
XM_036964700.1 mRNA downstream 118201 24483236 ~ 24484420 (-) True LOC118944659
LOC110505156 mRNA upstream 27242 24646359 ~ 24647543 (-) True LOC110505156
XM_021594142.2 mRNA upstream 38693 24657810 ~ 24712733 (-) True LOC110515097
XM_021594161.2 mRNA upstream 108486 24727603 ~ 24765483 (-) False LOC110515141
XM_021594163.2 mRNA upstream 147932 24767049 ~ 24799511 (-) False LOC110515154
XM_021581799.2 mRNA upstream 189308 24808425 ~ 24815449 (-) False LOC100305168
TU271769 other downstream 81077 24521219 ~ 24521544 (-) True G237832
TU271573 other downstream 418657 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 419067 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 822486 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1413590 23157109 ~ 23189031 (-) True G237047
TU272242 other upstream 150445 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 150587 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 317399 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 317550 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other upstream 318512 24937629 ~ 24947005 (-) True LOC110515208

Expression Profile