RNA id: LOC110505156



Basic Information


Item Value
RNA id LOC110505156
length 1185
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC110505156
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24646359 ~ 24647543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaccattttgggttccatgtagaaccctttccacagacgggacagccgaagaacccctttatgttctagatagcacctttttctcCTAAGAGTGTAACTTCTGAACCTGAAGAGGGAACACCAGACCACTTCTTCATTGCAAGCTGACTACAGTCATCGCCTGCCCCAGTCTTCTGAATGTTGCCCAGTGTTCTCAGCTATGCTTGTTCAATCTCCACCACCCACGCCTTCACCATGGCCCTTAGCCCACTTCAGACCCCACATGGCTCCTGATCCCAACCGGCCCATGGAGGGGGCCATACGGACCAAGCTCACCCAGCAGCTGGAGCCAGAACCCCTGGAAGTCCACAACGAGAGCCACACGCACGCCGTGCCCCCTGGATCCGAGTCCCACTTCCCAGTCCTGGCGGTCAGCCCAGATTCGACTGCCTCTCCCAGCTACAGCGCCACCGCCTTCTCAATGAGACCCTAGCCGAGGAGCTGAAGACCTGTATCCACGCGCTGGCCATCCAGGCCAAGACACCCCAGCAGTGGGGCAGCAACCCCAGTATAGCCAAGAGCCCACCCTGCATGGGAGGATCCAAGGGGGACCACAAGGTGGAGGAGGAACTCAAGGCTGGATGGGACTGACCAGCGAAACTCAGCAGTCATCAACCCTGGTTCTGAAGAGTAACAGCCTGTGCAGGCTTTGGTTCCAGCACTAACTCATCTATTaaaatgtgttgtctgttcaaGACCTTGAATAGTTTAATCAggtctggaacaaaagcctgcacgcCCCATATGCCTGTAGTTTAATCAGGTCTGGAACAAAAACTTGCACGCCCATATGCCTGCAGTTGAAGATGGTGTCTATTAACATTGTTGTAAACTAGTGTGATATAATTTAATTACTGCTTGAGAGGTTGTTTCTAAATGAGCAGCATCACTTCGGTCTCTTGGCAGTTTAATTCAAGAAGAGTTGTGTTTTAGATTAATTAGACTCTTGCATTTAGTGGCCATCACTATAATGTCTCAAGATCTTGTAGTTCAGTAGTATGTGGTACATTGAACTATATGATATGAAGTGATGGAGTGTGTCTGTTTTGTCTGAAAATAAAATGTCTTGTATGTGAGGGCAGAAGTACGAGAAGTCAAGACAGAATAAAGAATATGTTTTCTCAGGTGCATTGTGGCAGTTTTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU271818 lncRNA downstream 85783 24560332 ~ 24560576 (-) True G237877
TU271804 lncRNA downstream 93379 24552693 ~ 24552980 (-) True G237863
TU271803 lncRNA downstream 93985 24552115 ~ 24552374 (-) True G237862
TU271791 lncRNA downstream 111498 24534558 ~ 24534861 (-) True G237851
TU271790 lncRNA downstream 114311 24531715 ~ 24532048 (-) True G237850
TU272307 lncRNA upstream 70195 24717738 ~ 24718558 (-) True G238315
TU272308 lncRNA upstream 72193 24719736 ~ 24719969 (-) True G238316
TU272237 lncRNA upstream 116163 24763706 ~ 24764733 (-) False LOC110515141
TU272238 lncRNA upstream 116163 24763706 ~ 24764471 (-) False LOC110515141
TU272245 lncRNA upstream 117269 24764812 ~ 24765362 (-) True LOC110515141
XM_021594134.2 mRNA downstream 27242 24602621 ~ 24619117 (-) True LOC110515085
XM_036972936.1 mRNA downstream 69949 24565713 ~ 24576410 (-) True LOC110515051
XM_021594113.2 mRNA downstream 69987 24565713 ~ 24576372 (-) False LOC110515051
XM_036972942.1 mRNA downstream 70003 24565713 ~ 24576356 (-) False LOC110515051
XM_036972935.1 mRNA downstream 147374 24400704 ~ 24498985 (-) True LOC110515020
XM_021594142.2 mRNA upstream 10267 24657810 ~ 24712733 (-) True LOC110515097
XM_021594161.2 mRNA upstream 80060 24727603 ~ 24765483 (-) False LOC110515141
XM_021594163.2 mRNA upstream 119506 24767049 ~ 24799511 (-) False LOC110515154
XM_021581799.2 mRNA upstream 160882 24808425 ~ 24815449 (-) False LOC100305168
XM_021581795.2 mRNA upstream 160882 24808425 ~ 24815467 (-) False LOC100305168
TU271769 other downstream 124815 24521219 ~ 24521544 (-) True G237832
TU271573 other downstream 462395 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 462805 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 866224 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1457328 23157109 ~ 23189031 (-) True G237047
TU272242 other upstream 122019 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 122161 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 288973 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 289124 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other upstream 290086 24937629 ~ 24947005 (-) True LOC110515208

Expression Profile