RNA id: XM_021594161.2


Basic Information

Item Value
RNA id XM_021594161.2
length 8387
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110515141
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24727603 ~ 24765483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaaggcactgtgtatatatatatgtatgtatgtatgtatgtatatatatatgtatatgtgtgtgtgtatatatatatatatatatctctaccATTTTTAGATGTCTCCCAGTATCATAATAATTCTGGAGTTTGGAACATATCACATTTTTTAGATACCGTTTTGGTCTCGTGTTACACAATGATTTGCAGATTAGGAATTGATTTGTTTTTCTCATCACCAATGTATTAACACTTTCTCATCCAAGCCGTGTTATTACCAATGAGCCATGTAGAATCATGAGGAAGACTAATCTTCCTGACTCTATAAACGTCTTTTCACTTGAAGCACAATAGCGAGAGAATATCTGTATGCAATTCACTGCCTTGCTCAATGGATGGCGCTCTTGTATTTGTATTCAATGTTCCTGAAGTTTCCATGCTTGACTTAACCAAAAATACAAAAGAGAACAATTTATGGGTACTAAGATTtgagtttatttaaaaaaataacatttgccAAGGGTATGAGGGACTCTTCTCTCTTTTTAAGTAACATTTGTCTTTTGAGAGGCAGTTCAAACATGCGGCTCAAAATAGTCACCCTTCAAGGGAATATTCCATGACTTCGAGGTGGCATGTGCATCTTGAATTGGAACCAACCATTCCCCACAATACCATTAAGCTATATCCCAAAcaatatttctgtgtgtgtgtgtgtgtgtgtgtggggggggggggggggggggggggcgcgcgTGTGTTTGTGCGCTTACGCTGTATGAAACCATTTTGCAACAAAAAATTGCAGCTCATAAGGCACAAACAGGTCATCTTTAATGAAAAGATGATGGCTAACTAAGAAATGGGTGTATGTgtgctttctcctctccttccaatGTAACAATATTTGCTTACATCAacaacaattattattattttttaaagaattGGATGGcttacagacaacatcttgaACATTTGACTTAGACTGCAAACATTTTTGTATAAAAAACAAATGACTGAGGTTGTATATGTTCAAGTTATTTTTGTAAACCCAAAGTTTTACAATGTTTTTAAAGATAATCTATATTGACGGATGCTAAAATTAGTGGAAGATAAGCTTATAGCCTGGGTTTATGGAGGAGTCAGTATTCATCAGAATGGACAGTTTGGCTGTCAAGGTTGATCACAAAAGAGCCTCCTAAACTCAAAGGTTTCTCATTAGCAAACTAGTTTCCTTCTTGCTGACCTGACGATATGATTTGAGAATATATATTTATAGtgagaatctttttttttttctttttttccagaAGCTTCCTTTTGGAATGTTTAGTTGAGAAACTTTTAGTATCTTTCCTACGTGTCAAGCAGACTGgcttttatttgtttgtttttatttgaattttaagtttattttttatttctcacCACCAATCCATGCAATGCTAACACATTACAGCAATGATTCAATACTTGATTGTTGGTGTTTTCAACCTATACTCTTGCTGCAATCCCTCTCTCGGAATAAGATGGCTTTGAATTTGTTTTACTAAGTAACTGACCCATTATTTTTCTATAGTACATTTTCTCATTTCTATGGGACAGAATAGTCATCAGCAACATGAACATGGGATACTTTAGTTGCATGGGACTGGAATTGTTGCATGTAAATGACTATCcatttaaacaaatttgtgcattaTTTTGAGCTGATTTGGGCAGTCCTGGTTTTGTGACCAGTTTTTTTCATCTTTTCATGTTTGGAGAGGAGAGGCTGTGACAGTGCAATCTGGATGGAAAGAACATCTgattttaattgttttttttttgttttgttttgttgatgcaCTGTTTGAATAAATTCTCATTGTATTTCAACAACATGGTGGCAATCCCAAAAGTTTTACTCTGTTTctgacttttttgggggggggggtttacaaaTGTATGGTAGGTATTCCAGAGATGTACAGAAAAGGGATTCTGTTTTTCAATGTGCTCATTGGATGTACAATAATGTTGGATGAAAGGTGAGAATTGGTATTATCTTGATCTAAGGATGATGTAATTGTGACACCGTTGATTTATAATCTTTCGTGGCCAAACGATGTAAACATAAATAGTACCGTAGTCCAGTACATTTATCGATCATCTGACCAAATGACAccagattttagttctgggttaactgaAATTACATTGTTAGAGTCAGTTTGTACATCGATACATCTACATCTGATGCCAGCCAGTGGATTTAAATGTAAAACTATTGGATTATATTGTCCAATTATCAATTGTGTTGAAACACTCAAATCAACCATGCAAGAGAGACTTAACAGCAAAAGCTGTTTTTACATATTAGAAACAACTCATCACAGCATTACACATTAGAAGTAACTTTCACCCAGATGATGCAGCCCACACTGCCTGAAGCTGTTCTATGTATTAGAGAAATTGGAGACCCTTATTTAATATTGAATAGGGTCCCATGTGGTCGAACGAGGTTTGGATTTATAGCTCGTTCACAAGGACACGGTCTCCCCACCTGGCTGTTAGGAGGGACAGACTGTACTTCATCCATTTAGAATTTCTATTTGCTCATCGAAAGGAATTTATGCAGTACATTCCCACTGGAATATTCTTCCAATAGCATCTGTCTGCATTACTGCAGTACTACCTTTCTACATTGTCAGTTCCGATGACAGAGCAGCCATTTATCAAAGGATCAACTGCAGGTACTGTATCACTCATCCATCACTTGCCTTTGTTAAGACTAATAAGACTAACGCCTACAAATGGGTACcttttcttgggggggggggtttattttGTATGTAGTTGTATGCTGGTTGAAACTACTGGTCATTTATGTAGATTTTGAAGTATTGTTTTTATTGCTTCTGTGCTCTTTAAGCTTAGTCATCCTCATGGCTTTTTCTTATGTTTACATCATTGCTTCCATTCTTGTTTGAAATTCTCAAGGTAGGCGAGAAGTTGAACACTTAGTGACAATGCCATTTTACAGAATACTACAAATGCAGCATCCAACTCATTCTGCATTAGTAACATGGGTATAATGATTTACAACTATTTTACAAGCATGTATGATCCTGTAAAATGTTATAATGCGGCTGATGTGAAGTATCTATATGAGTTAATGGGACTAGACTGTCTAAGATATCACGTTTTTATTTCAGGTGGTTTTCGAAAGTTCTAATTTCAGTGAATCAGTTTGTCAATTACAAATGACAGTGTAGCATTGGAGGCAAAACACTTGTATTTAGAAATATATGTGCATCTGTGTATAGGCCTGTATTTAACAACTTATTAATTGGCCCATTTGAACCATCACTATTTCCATAAAACTAGGCTTACTTCAAAAGCTCTACATACCTTTCCTAGACCGAACATGCACACCTTGTGGCTTAATTTGCAGGACCATTAGTGAAGAACAAACTACTGGTAAAACAAAAAAATGGATTCCTATTAGATGCTTTTTTACACTGCTGGCCCTTTAAGAGGCTCTACTGCACTTGCTTGTTTTCACTGGTGTGTGTCGTTTTAACTATGGTGAGGGGAAACAACAAATGGAACGCAAGAGGGACAAGCAGAGGTATACATTAATTCCCCTTACCAGTGACTGACAACCTATAAGCAAATATTCCTGACAGGCGGTACATTTATGCGTGGCGTGCTCTACACagtagcgtacagacatggaTGCTTTCGCCAATGATAAACGTGAAAGAAACTAAATTAGTTTGTAATTCAGAGACCACTTCTGTTCTCGAAACCGGTGATGCATGGACTCGCTGACATTCGAAGAAAGTGGACCGTTTCTTATGTTTTCCTGGAAAAGACATGGAGCGATTAAAGGCATTTTTTCTTCTCGCCATCGGAAAAAACGTAAATTAACTAAAGTCTGATAGCTTACTTTCTGTAGTTCGTGCCGAGAGAGTTGGACATTGGACGTCAAAATGTTAACGGGATCCAAAACCACGTTCAAAGTGAGGCAAATGGTTCCAGATATAAAGgaGAGGATGCTGAGTCACAGTGGTGTCAACGCACGGGGTAGAGATGTGTTTGGACTGCGCTGCTTACCAGGAGAGTGTGTGCTGCAGAGGGCTCTGTTGGTGAGGAAGAAGCTAACTGCCAAGGAGGGGGGTGGATGGCTGTCTGGCACTCTCTTCTGTACCCACTTCAGAGTGGCCTTTGTGCCTCAGGACAGCCCCAAACCTGACGACAACGCAGACCCTGTGCTCCTGGGGGATCATGACGTGGCCCTGGCCTCCATTGAGAAGGTTGTAGCTGTGGGCCCATCCCGGACCAAGCTGGTGACGGCTAGCTCCTCTCTGAAGTTCACTCCTGAGGAGCTGGTGTTGTACTGCCGGGACCTGCGTGTTCTCTGCTTCCTCTTCGACCGCCTCACCCCCGACACACAGGCTGTGGAGATAACGTACACCATTGCCAAGACCTACCAGCCTCTGAAGCCAGGGACTGTCCTCGCGTTCCAGAATGCAGCCCTGGGGAGCgttgaGATGAAGCAGTTCTTGAGCAACCGTAGGCGTGACTCCCACATGAACTGGTTTGATAGTTCTTCGGACTGGGAGCAGGAGCTGGAGAGGACCGGGGCCTGCGGCTGGAGGGTCAGCTCTGTCAATGACCGCTTTGAGATGTCCACCAGTCTGCCCAAGTTCAACGTGGTCCCCCAGAAAGTTCTAGACACTGAGCTGAAGAAGACCTTTGCCCACTTCAACGAGGGACGCATTCCTCGCTGGTGTTGGCGTCATCCTCGGGGCAGTGACCTGCTACGGATGGCCAGCTTCCAGAACAACATCTATCATGAGAAGGATgacatcagGAACCTGGAGTTGATCCTGTTTGGGGGCCAGTCTCTATGTGTGGTGGTGGAGCTGGGAGACGAGATGCCTTCACCCACAGACATACAGCTGGCACACACCCGCCTACGGGCTCTGTGTCTGGGAGACATCTCCACATCTGTGTCGGTGCCAGATGACAAATGGCTGTCTACGCTGGAGAGCACCCATTGGCTGGACTACACCAGGTGCTGTCTGAGGAAAGCTGCTGAGGTGGCCTGCCTGCTCCGCGGAGGTCACCTGACCGTGGTGCTGCAAGAGGCGGAGGACCGAGACATGACCTGTGTGGTgtccagtctggtccaggtgaTGTGTGACCCCCACTGCAGGACCAGGGTGGGCTTCCAGGGTCTGGTGCAGAAGGAGTGGGTGATGGCTGGACACCGCTTCCTCAGCCGCATCAACTACCACAGGGACAGCGATAAGGAAGAGGCACCAGTGTTCCTGCTCTTCCTGGACTGTGTGTGGCAGCTTTGGGTCCAATACCCATGCCGCTTCCAGCTGACAGGGGACTTCCTGCTGGCCCTCCATGACAGTTTCCACCTGCCCCTCTTCAGCAGCTTCCTGGCCAACTGCCACAGGGAGAGGTGCAAACGTTCACAGaaCCTATCCCAGAGTTACACTCCAGTGAATGGCTGGAGAGACCTGGTACCCAGGGGCTCCTTCCCAGACCCCTCAGACCCCCCTCTGCCCCCTGTGTGGGACTGGGCTCTGCAGTACAGCAGCCAGAGACGTGAACGTTTCACCCAGCCAGTGCCCCCGCTCACCCTGCCACAGCCCCTACTCAACGGCAACCTCAACACCAACCCTGAGGCACACAGGCTGAGTGACAGCGCACCAGGTTCTGTGTTCCTGCTCTCCAGGGGCTCCTTCTCCTGCTCTGCTAACCTCCTGCCCTGGCGCAGTGGAGGGGGCTCAGGCGTCTACCGGAAGAGCCACCGGAGAGGGGGGTCCTCCTCAGAGAACCTGCCGGGCCTGGAGAGGCTTCTGAAGGCCTGGGCCCTCACAGAGCTCCCTCAgggccacaccaccaccacatccgGTCTCCAGGGGCCCCTGGACTCCTACGAGCCTCTGCTGCCCCTGCTCCTGGGGCCCTGCTTAGGTGTGTGGAGGGACTGCTACCTCCGTGGGGCTCTTCATGCTCAGGCATTCTCCCACCCCATCTCCTCATCCACTCAGCACCCAGTGGAACAGCTAGCCTGGGAGGTCCAGCAGCTCAGAGACAAGCTGACGTTGGCCTCCAGCCCCACTAACACAGTCCCAGCCAAGACACAGGAGCCCCGTCGGACAGATTCCAACCTCAACCAGAACACCAACAATAGCACCTTCCTCTTCCCAGCCTCCAGACCCCCTGGGCCGGTTGCCTCCAGAATCACGCCCCCTATCTCAAACCTCCAACCCAGGGTTCCTCCAGCTCGTTCTAGAGCTGGTCACAGAGACAGCAGCAAGCACACATTCCTATTTGGCCACCCATCCTCTTCAGAGTCCCGTCCAGACCAGCGTTACTTGCCCGCGCCCAATAATAATGCCAAGCTGCCCAAGAGCAACGGTCCTTCACTGGGTTCCTGAGCTCTGGGTGTCCCCTGTCAGTTAGCACAAATGGTACAAACTGTTCCCCCGGCTCTGAACTCTAGAATGAGATCACCTATACACACCCTCCAAGACTCTATTTCCTTCCCTGACACCTGATCTCTGGGTGGAACCAGATGTGATTTTCCTGTCAAGGCCTGTTTGAGTGGCTTTGAGGCAATAACAAGACGAGGAGGGTCATGTACTGAGCAGGGAGGAGAGTCTAAACTGCAGTAATAATGCATTGAGCAGTGCAAAGCacaaatagtatttgaaagaTTGTTTAACTTGTAACAAATTGTCTGTTTTACTGAATATGACACCCAAACTGAAGGTTCTGGTCAGCATCCCTGAGAACGTATTGGTGTTTTTAAAAGCAGCAAGCTAATACCCAAAATGAATAAGGGCTGATGATGATTGATAAGCTAATGACATAAGGGCACAAATAATGAGCTGTTGGCTGAAATATGGAATCAAATACCTCTATTGATCAGACTTCAGCTGTTTTTAGAATCATGATTTCAACGGAGTGACAACCTTCATTCTTGACCAGACGGCTATAATAGGACTGTTGTCCTGACTCGGTCTCTTAGTCCTTTTGAGTGACTACAACCTCCAGTTCCAAAACCAACTCAGCCTTGAGAGGAAAAATACAGAGAGCTGCTCACCAAGTAAACACTAGGGAGAGACATTGGCGTCACAAAAAACATGCAGTTTTAACTCCAGGCATTTTGTCCAGCAAATTTAACCTGGAATTTAGGGCACTGGAGCTATTTTGGTGCCGTTCCCATATCTTTATACTTGCATGCATGCTAGTAGTGAACAATGAGAGGCATAAGCTGAGTTGTGTGACTCTGTATCATAACCCTGTTTTTCAGAATATGGCCATGGTCAGTTAATATTGCTGTAAGTGTGCATGATTGGGATAAAAGTGCTAATATTTCTATTGTCTGTGCATCTCTATTGAGAGTTCGAAGTATTATTGACCAACTTTGGTTGCGTATGAATTTCAGAAATTGTAACGATACATTTTTAAGTGATCGTGACCAAGATGAGTATTACTCTTTTTTTTTCCCCTTATGCTGTCATTGTGCAAACCATACGTTCTGATGGTTCATATTTATAATTTACTTTTATTTGGTACTTCTAGATGTAGCTTTAAGGTAAGCAACTTTTTTTTCAATAGTGTATTTCTTCATGACTTGTCCTGACTGCTAGTTTCGTATTCAGCTTGCATTCAGGTCGAGGACTTCTAAATGCGTCATTTCATTCAAAACCCAGTGAGCTATTGGGACTGGGCTACTCAGTCCAGCCAGATTGTTGTTTGCATGATGTGGATATTAAGCAGCAAATACACTGGCATGATTTCCATATACTGTAACACTCAAGACTACAGGGATGTACTGTGTGTTTATACCAAACTAGCATTTCCATACCGAGAAGCACTTGTATTGTGTGACATAGGATGAAAGGGTTTCTGGCTGGCATACAATGTATTTCTCACTGAAATGTCTCATTATGTTTATGAACTATAAAGGCTGAAGGTGGTAATGTATGTGACTTACATTGGTCTGTATTACCTACAGTCATTCCTATGCCTCAGTACGAGAGCATTTTGAATTATTCAATGGCTGTAAATATTCATTGTTGAATATCACAGCACACTGATATCAGTTACTGAATATCAGGTTGTTTGTGTTTTTGGATTTGATGCCAGTACTTTTGCTCTCATCTTCCATGGAAAAAACAAGGTCATCACATTCCCTAATGGCATTGGCTCTACAGAGAGAAAATGAAATGTCCCTTTCAGCATGCAACCCCACTTCCTGTGTCTCTACACCAttatatatttaaatgttttggtacgAATGACACAATGATTTGCCAGATGTACATATTTTTTGTATCAGCATGTTAGGATCCTGATTAATAAACTATTATAAGTTCATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272308 lncRNA downstream 7634 24719736 ~ 24719969 (-) True G238316
TU272307 lncRNA downstream 9045 24717738 ~ 24718558 (-) True G238315
TU271818 lncRNA downstream 167027 24560332 ~ 24560576 (-) True G237877
TU271804 lncRNA downstream 174623 24552693 ~ 24552980 (-) True G237863
TU271803 lncRNA downstream 175229 24552115 ~ 24552374 (-) True G237862
TU272243 lncRNA upstream 1720 24767203 ~ 24769331 (-) False LOC110515154
TU272244 lncRNA upstream 1720 24767203 ~ 24768261 (-) False LOC110515154
TU272416 lncRNA upstream 163316 24928799 ~ 24931448 (-) True G238414
TU272527 lncRNA upstream 363619 25129102 ~ 25129653 (-) True G238494
TU272545 lncRNA upstream 384067 25149550 ~ 25149823 (-) True G238509
XM_021594142.2 mRNA downstream 14870 24657810 ~ 24712733 (-) True LOC110515097
LOC110505156 mRNA downstream 80060 24646359 ~ 24647543 (-) True LOC110505156
XM_021594134.2 mRNA downstream 108486 24602621 ~ 24619117 (-) True LOC110515085
XM_036972936.1 mRNA downstream 151193 24565713 ~ 24576410 (-) True LOC110515051
XM_021594113.2 mRNA downstream 151231 24565713 ~ 24576372 (-) False LOC110515051
XM_021594163.2 mRNA upstream 1566 24767049 ~ 24799511 (-) False LOC110515154
XM_021581799.2 mRNA upstream 42942 24808425 ~ 24815449 (-) False LOC100305168
XM_021581795.2 mRNA upstream 42942 24808425 ~ 24815467 (-) False LOC100305168
NM_001165072.1 mRNA upstream 42944 24808427 ~ 24815402 (-) True LOC100305168
XR_002472214.2 mRNA upstream 54360 24819843 ~ 24825136 (-) True LOC110515174
TU271769 other downstream 206059 24521219 ~ 24521544 (-) True G237832
TU271573 other downstream 543639 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 544049 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 947468 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1538572 23157109 ~ 23189031 (-) True G237047
TU272242 other upstream 4079 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 4221 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 171033 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 171184 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other upstream 172146 24937629 ~ 24947005 (-) True LOC110515208

Expression Profile