RNA id: XM_021594163.2


Basic Information

Item Value
RNA id XM_021594163.2
length 5340
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110515154
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24767049 ~ 24799511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCGATTGCCTGCCTCTCTTTTCTCTGCAGCCAATCGGGGTATGAAGGTTTCCCCCTCTCCCGTTTCCATTTGACGTTAGCTACACTGGGATATTTCAGTCAAAAAGTATCGTGTGGTCATTGGTGTTTTAGATTGGCAGTCAACTTCTGTCTGTTTTGCGATTGGCAGGCGACATAATTTGGCTACCTCAGCTGGCTCGACTCAGAAGCGCCTTGGTTgacattgttgttgttgtaagtAAGAAACTACTTTGTCGTTGAGTCCTGTTTTGGATTTACAGTAGACTGCAACCTCTGGATTGGCTCAAAGTCAGGAAAAACTGGTCTAATAAAGGTGGAGGTTTTCACAGTATTTGTCAAGAGGGAGGACCATTATGGGACGATGAAAGAAATGTCTGCGAGGCCGCTCAAGGTTTGGCTGGACGTGTAAGGCAAGTTGAAGAGTCCCCCTTCCCCTTGGTCCAGTGTTGTAGGGGAGGGCAGATCCCCTGTTTTTTTTCCTACCCTGATGCCGCCCTGTAAATTCATGATCACATGACCTTGGATATGGACGCAGTCCTGTCCGACTTTGTCCGTTCCACTGGAGCTGAGCCAGGACTAGCCAGAGACCTGCTAGAGGGGAAGAACTGGGATCTCACCGCTGCCCTCAGTGACTTTGAACAGCTGCGACAAGTGCATGCTGGGAACCTGTCATACTCTTTTGCTGAGGAGAGGACGTACCCAGGCCCGGAGAAGGAGATGGCCAGAGTGGGGCGGCCCCTTCTTCACCGTCAAGAGGAGGTGCCGCAAGGTGAGAACAGTGCCACAGAGAAGCGTCTATCGAGAGGCATCTCCCATGCCAGCTCTACCATTGTGTCCCTGGCACGGTCACACGTCTCCAGTACGGGCAACTGTAGTAGTGAGCCCCTTCTGGACACGCCTCTGTGCACATTCCAGCTGCCTGACCTCACCGTGTACCGGGATGACTTTCGTGGCTTCATCGAGAGGGACCTCATCGAGCAATCTATGATGGTGGCCCTAGAGCACGCCGGCCGACTCAATTGGTGGACACGGGTGGGACCTAACTGTCAGAGTCTATTGCCATTGGCGACGAGTGGGGACGGAAACTGCCTGTTACATGCAGCGTCATTGGGTATGTGGGGCTTTCATGACCGCGACCTGATGCTGCGGAAGTCTCTGTATGCACTGATGGACCACGGCCAGGAGAGGGAGTCGCTGAGACGCAGGTGGAGGTGGCAGCAGACCCTGCAGAACAAAGAGtcTGGTCTGGTGTACACAGAGGAGGAGTGGCAGAAGGAGTGGAATGAGCTGCTTAAACTGGCCTCCAGTGAACCTAGGATACACTATAGCACCAATGGCAGCAATGGGACGGAGTCATCAGAGGAGCCTGTGTACGAGAGTCTGGAGGAGTTCCATGTGTTCGTCCTGGCCCATGTCTTGAGGAGGCCCATAGTAGTGGTGGCAGACACCATGCTCAGGGACTCTGGAGGAGAGGCTTTTGCCCCCATCCCATTTGGAGGGATCTATCTGCCCCTGGAGGTGCCAGCTGCCAAGTGCCACCGCTCGCCTTTAGTGCTGGCGTACGACCAGGCCCACTTCTCTGCCCTCGTCTCCATGGAGCAGAAGGACGGCTCGAAAGAGCAAGTTGTGATCCCTCTCACTGACTCAGAACACAAGATGCTGCCTGTACACTTTGCAGTGGACCCTGGGAAGGACTGGGAATGGGGCAAGGATGACACGGACAATGTCATGTTGGCAAGTGTGACCCTGTCCCTGGAGGCAAAGCTCCAGCTGCTACACAGCTACATGACTGTCACCTGGCTGCCCCTGCCCTGTGAGCAGGCACCTTTGGCTCAGCCCGAGTCCCCCACCGCCTCTGCAGGAGAGGACGCCCGCACCCCTCCCGACTCAGGAGAATCCGACAAGGAGTCAGTCAGCAGCAGCTCCAACGGTGATGCAATGATGACAGCAGGGGCTGCCAGCGTAGGTGGAGGTGTGTCGACTAAGaacagctcctcctcctccagctcgTCCAGTAACAGCTCGGCAACATTGACGACGGGTACGGGGGGAAAGGAAAAGCCCAAGAAGGAGAAAGACAAAGACAAGAAAAGGGCTGACTCTGTGGCCAACAAGCTGGGCAGCTTCGGCAAGAGCCTGGGCAGCAAGCTTAAAAAGAACGTGGGCGGGCTGATGACGGGGAAGAATGCAGGAGGCAGCGGGGCCAAGCAGGAGGGCACAGAGAAGAAGAAAAGTTCGCTGAGGGGGCGGAAGGGCAGCAAGGACAGCTCGCCTTCGGCCCACGCCTCTGAGGACTCTGGGAAGGGCTCGCCGTCGTCGGGCAGTGAGCGTCAGAATGGCACGGGCAGTGGCAGCAGCGAGAGTGACCCGTATAAGTACAGTGCCGACGTGAAGGCGAGCCTGAGCATCCTGCGGGCGGCCATGCAGGGCGAGAGGAAGTTCATCTTCGCTGGCCTGCTCATCACCAGCAACCGCCAGCCCTTCCAGGAGGAGATGATCCAGCGCTACCTGTCTGACGCTGAGGAGCGCTTCCGGGTAGAGCAGGAGCAGCAGCGGAGAGAGGCAGAGCGGAAAGGAAGCACCAACGGCATCCAGCAGCCCAAGAAGGAGGCAACGGCAGGCACAGAGGTGGGCTACCGCACCTATGAACCGAAAGAGGAGTCGACTGAGAGCTCACCGCCCAACTTCAGCCACCTCAAGTCGTCCTCATTCAACCCCTCACTCTACTCCGGCGTGGTGCCCATCCCCCGGCCAACCTTCATGGACCAGCCGCCCTCCCCGGCCCTGCTCACTCAGCACCCACACATGCACGGCTACATGGAGACGCGGCGCCAGCTTGCAGGTGGCTCCCCAGCCTCGTCTTATCCCGGGCTGCCTTCCTATGCCACCCTCCCCCGCCACTGCCCCATGGCGCAGGGCCCCCCTCACCCCCAGTACCACCCCCCGCAGGCACCGGTACCCCTCAGCCCCTTTCGCCTCATCCCCTCTTTCGCACCCTCATACCTCCCCGAGCACGACACTCCAGACTACCCCACCTCAGAGCCTGTAGGCGGGGGCTACACTAACGGATTCCGGGACTTGCGCGCTGCCCTGGATGTTCCTCGCAGCGGGCCTCTCCCGGTCAGACACTACTCCCTGGGCAGCGCCGGAGGCCTGTCCAGCCGCTGCCGGACGCCCAGCTGCAACTACTACGGTCACCCCGAGACGGGCAACTACTGCTCCTGCTGCTACCGAGAGGAGCTGAAGAGGAGGGAGACGGAGCCAGCCATCCACAGGTTCTGAACAGACGGACTGACCAGAACTGGCTTTGTGGCCACCAACCACAAGGAAACTGATGGATGAGGTTTCTTGCTATAGGACGATACAGAGCCTGGCCCTCTTATCGCATCACTTCCTTTTCTAAAGGCAACACTGTGTGTGGAGAGCGTCCTGGACAGGATCAGTGCAGTGACTTCAGAGACTGGAGAGAAGGGGGCTGCGGCGAGCGTTAGACAATAGGACTGTGCACATCTCTTACATTTGTTGTGGCTCTtatgcaggctgtgtgtgtgtgtgtgagaactgcAAGCTCTCCTCCACTTTGTCCCCTTGTTGCCTTGCAGCTGTCTCCTCCTGGTGGAGAGAATGTATACGGCAGGCGATACACGCACACTGACAttcacattacacacacaaactaacactGCACAAGCACAACCAGAAACTTCTTGATTATCACTCTTCTCCATATGTGGAGACGACCTATATTTGGCCCTGTAAATTGGTGGTATTTTAACATACGAGTCAACCCTTCAATGTCTTGTTAGTCTTTTCAACCAGAGGGTTAGAGATGTATGCAGACGGACTAGCCCAGGGCATTACTGTTACCGGGTGCTCATGTATGACTTGGGAATGAACAGTGCTCTTTCCTGATGAGTAGTTGGGTTTCTTTTGCGTTGGTCCTCGCTCTTGTAATGCAAATTGAAACTACAGTATTATGTTACAGTGGTTGCTGTTCTGGCTTCAACGGTGCTGCTAATGTTCCAGAATGCAACAGACCTCTATTCAAGTTCATCTCAAATATAACAAGCAAAACAGATAGTCCTATCCACCCTTAAGATGCCTTTTATGGCAAAGTAGCCATCCAATCTAAAATCACCACTGTGTCCAGATGTCAGTCAAGTCCATTTTTATACATCTACCATGTTTAGATGTCTCCCAGTATCAATTATAGAACATACATGGCGGAGTACTGTGGTAGATATTCCCAAATGGCTAATATACAGTTTTTAATAAGGTTGCTAGATTCTTACTGTTCCTGGCTTGTTTTTGTCATTTTATATCCATCATGAAAATGAGGCATTTCAATAATATGCTGGTACATTTAGGGTCATCCAACACTACTAAACTGGCATTCAAAACCAACTCCCCTCGCATTTTCAGCTCAAGACCTCAAGGTAATCAGTACATGCTAAACTGATGAACGTTCACATTTTGGTTGAAAAAGACACTGTCCATTGTAACATTGTAACTCTGCTTCTCTTGTGGCTGAGAAAGGTAACAGGTATTTTATGGAATCTTGTCCATAGGGCTGTGTTACTTTAGTCTAAATATTAATAACTTTTCGTGAATACCTACTTATGGCAAACCCCAAATTCCTGACATGGACACCCCATTGATACGATTAAAAACAAGTTGGATTATTTAACCCAAATCCCCTTCAAGTCCTAATTGAGGGCATTGTGTTGATTCCAAACAAGTGACTGACCCCCGTCGCTTAACCTCTCTGCACAAATTCAAGCACTTTCCTAATGTCCGTAGACATTTTGTTACCGTTTTGAAGGTATCTGACTGTTATGTTGTCCTTAGGTCATGTCAGAACTGTAGACACTGCACCTCTACTTGCAGGAAGGCAGACGCATGGGCTAGAACCCCTTCGCTAAGGATTCAGTTACCATGGGAACAGCTTTTTGGTGCCAGTGTTGTGGTTTAACTCTATTTCCTAGTTGCCTTTTTTCAGTCTCTTGTCCTTGTGGCATTACAAtcttgtttgtatgttttacaaaATGTGCATCAGGTGTACAATACTCGTTTTTGCTGCAGTTTCTCGTCTAGTGTTTTTGTACCCTACTCAGTGTAAATCCcctgtttttaaatattttcatTTTGCACCCAGACATGGAGTCATTTTCGAAGATCATAACAAAGTGATTTAGagatcaaatgtaaaatatatatatatatacatatacatatacatatacatatatacatatgtatatatacagtgccttgcgaaagtattcggcccccttgatctttgcgatcttttgccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272245 lncRNA downstream 1687 24764812 ~ 24765362 (-) True LOC110515141
TU272237 lncRNA downstream 2316 24763706 ~ 24764733 (-) False LOC110515141
TU272238 lncRNA downstream 2578 24763706 ~ 24764471 (-) False LOC110515141
TU272308 lncRNA downstream 47080 24719736 ~ 24719969 (-) True G238316
TU272307 lncRNA downstream 48491 24717738 ~ 24718558 (-) True G238315
TU272416 lncRNA upstream 129288 24928799 ~ 24931448 (-) True G238414
TU272527 lncRNA upstream 329591 25129102 ~ 25129653 (-) True G238494
TU272545 lncRNA upstream 350039 25149550 ~ 25149823 (-) True G238509
TU272613 lncRNA upstream 371815 25171326 ~ 25172226 (-) False LOC110515384
TU272627 lncRNA upstream 379125 25178636 ~ 25178846 (-) True G238588
XM_021594161.2 mRNA downstream 1566 24727603 ~ 24765483 (-) False LOC110515141
XM_021594142.2 mRNA downstream 54316 24657810 ~ 24712733 (-) True LOC110515097
LOC110505156 mRNA downstream 119506 24646359 ~ 24647543 (-) True LOC110505156
XM_021594134.2 mRNA downstream 147932 24602621 ~ 24619117 (-) True LOC110515085
XM_036972936.1 mRNA downstream 190639 24565713 ~ 24576410 (-) True LOC110515051
XM_021581799.2 mRNA upstream 8914 24808425 ~ 24815449 (-) False LOC100305168
XM_021581795.2 mRNA upstream 8914 24808425 ~ 24815467 (-) False LOC100305168
NM_001165072.1 mRNA upstream 8916 24808427 ~ 24815402 (-) True LOC100305168
XR_002472214.2 mRNA upstream 20332 24819843 ~ 24825136 (-) True LOC110515174
XR_005039843.1 mRNA upstream 43939 24843450 ~ 24844713 (-) True LOC118944507
TU271769 other downstream 245505 24521219 ~ 24521544 (-) True G237832
TU271573 other downstream 583085 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 583495 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 986914 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1578018 23157109 ~ 23189031 (-) True G237047
TU272446 other upstream 137005 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 137156 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other upstream 138118 24937629 ~ 24947005 (-) True LOC110515208
TU272614 other upstream 399577 25199088 ~ 25236367 (-) True LOC110515384
TU273578 other upstream 1023845 25823356 ~ 25824757 (-) True LOC110515750

Expression Profile