Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001165072.1 |
| length | 963 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 7 |
| gene id | LOC100305168 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 24808425 ~ 24815467 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0006417 | regulation of translation | biological_process |
| GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | biological_process |
| GO:0051028 | mRNA transport | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K12876 | RBM8A, Y14; RNA-binding protein 8A |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU272243 | lncRNA | downstream | 39096 | 24767203 ~ 24769331 (-) | False | LOC110515154 |
| TU272244 | lncRNA | downstream | 40166 | 24767203 ~ 24768261 (-) | False | LOC110515154 |
| TU272245 | lncRNA | downstream | 43065 | 24764812 ~ 24765362 (-) | True | LOC110515141 |
| TU272237 | lncRNA | downstream | 43694 | 24763706 ~ 24764733 (-) | False | LOC110515141 |
| TU272238 | lncRNA | downstream | 43956 | 24763706 ~ 24764471 (-) | False | LOC110515141 |
| TU272416 | lncRNA | upstream | 113397 | 24928799 ~ 24931448 (-) | True | G238414 |
| TU272527 | lncRNA | upstream | 313700 | 25129102 ~ 25129653 (-) | True | G238494 |
| TU272545 | lncRNA | upstream | 334148 | 25149550 ~ 25149823 (-) | True | G238509 |
| TU272613 | lncRNA | upstream | 355924 | 25171326 ~ 25172226 (-) | False | LOC110515384 |
| TU272627 | lncRNA | upstream | 363234 | 25178636 ~ 25178846 (-) | True | G238588 |
| XM_021594163.2 | mRNA | downstream | 8916 | 24767049 ~ 24799511 (-) | False | LOC110515154 |
| XM_021594161.2 | mRNA | downstream | 42944 | 24727603 ~ 24765483 (-) | False | LOC110515141 |
| XM_021594142.2 | mRNA | downstream | 95694 | 24657810 ~ 24712733 (-) | True | LOC110515097 |
| LOC110505156 | mRNA | downstream | 160884 | 24646359 ~ 24647543 (-) | True | LOC110505156 |
| XM_021594134.2 | mRNA | downstream | 189310 | 24602621 ~ 24619117 (-) | True | LOC110515085 |
| XR_002472214.2 | mRNA | upstream | 4441 | 24819843 ~ 24825136 (-) | True | LOC110515174 |
| XR_005039843.1 | mRNA | upstream | 28048 | 24843450 ~ 24844713 (-) | True | LOC118944507 |
| XM_021594179.2 | mRNA | upstream | 69226 | 24884628 ~ 24893913 (-) | True | LOC110515183 |
| XM_036973039.1 | mRNA | upstream | 88862 | 24904264 ~ 24920014 (-) | True | LOC110515194 |
| XM_036973045.1 | mRNA | upstream | 122227 | 24937629 ~ 24996687 (-) | False | LOC110515208 |
| TU272241 | other | downstream | 38104 | 24769704 ~ 24770323 (-) | True | LOC110515154 |
| TU272242 | other | downstream | 38456 | 24769562 ~ 24769971 (-) | False | LOC110515154 |
| TU271769 | other | downstream | 286883 | 24521219 ~ 24521544 (-) | True | G237832 |
| TU271573 | other | downstream | 624463 | 24180556 ~ 24183964 (-) | True | G237657 |
| TU271572 | other | downstream | 624873 | 24180556 ~ 24183554 (-) | False | G237657 |
| TU272446 | other | upstream | 121114 | 24936516 ~ 24966208 (-) | False | LOC110515208 |
| TU272443 | other | upstream | 121265 | 24936667 ~ 24952182 (-) | False | LOC110515208 |
| TU272445 | other | upstream | 122227 | 24937629 ~ 24947005 (-) | True | LOC110515208 |
| TU272614 | other | upstream | 383686 | 25199088 ~ 25236367 (-) | True | LOC110515384 |
| TU273578 | other | upstream | 1007954 | 25823356 ~ 25824757 (-) | True | LOC110515750 |
