RNA id: TU272446


Basic Information

Item Value
RNA id TU272446
length 3983
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC110515208
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24936516 ~ 25052970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaAAGGAATATGAGGAGGAGATCCACTCCCTGAAGGAGCGACTGATCATGTCCCACAGGAAGCTGGAGGAGTATGAGAAGAGGCTCCTTTCCCAGGAGCAGCAGACCAGTAAGATCCTCTCACAATACCAGAGTCGCCTGGAGGACAGCGAGAGGAGGCTACGGCAACAGCAGGTGGAGAAAGACTCCCAAATTAAAGGAATAATCAACAGacttATGGCTGTGGAGGATGAGATAAGGGGAGGAGCCATCATTGAGCCGCCAAAAGCTAACGTTAGGGTCTTCGCCGATCAGCCAATCACGCAGCTTCGTGGAGGACAATCTGGAACCTAATTGGCTGAGGCAACATGGGCAGCCCGCATGGCCTGGCCATATATCAAGAGCGCTCTCTCGTGATGCGATTGGCTGACAAAGGGAGAAGTTGGGCCATTGGTCCAATTCTCCTGACCTTAAGGATAGTCCAGAGCCACAGCTGACCATGTAAGGATCTGCTGTGTTATTTATCCTACTTTACTTgggccctctctctctgattggatGGCTGGACAATCTGTATTTGATGCTTGTGATAAGATGTTTGATTTTCTTTTAAAGACGTGTCAATCTCGGGAAATGGTTTTGTTGGCTCATCAAGCATGTGAAGAACAGCTATGCAGATTGACATGATATTAACCTTTTTTGGGATTGAGCAGTAAATGAAATGAGGGAGAGCTACTGTGTGTAAGATGCATTTCAAAGGTGCTGTAATCTTTCTTTCCTTACATTTTTCAATGATCTCACAATGTTTCTTGCATTTTTCCTTCCTAACATTTTCTACAGTCCACCCACTATCTACCCATTTCTCTTTCTATCTATTCTTAACCATTTTCAACCACCTCAGTTTATGTCCACCCCTTTTAGACTTTTCTGCTCCTGTTCATATCTCCCATGGTTTCGGTTTTGTTCTCTCTTCTTTATCTCTATTCGTTTTACATTTAAAGGAAACTAATTATGCACAGCCTATTACAAGTGAAACTGCTACAAAACAAAATATTGCTTCAATTAAAACTTTGGAAAATGTAGACAATGCTATGATTTATATTTCTATAATAATGCTTATTCTTACCGTAGTACTACAAAAACTATTCATTGGAAATCTTCCTGCGGAAATGTTTATTTCTTGATAATGACAAGACTCTAGTATCTCATGACAGTCCAGAAATGATCCATTTTGTATCAACTGATTTTTCTTAAGACAATCTTATGGAACATTACCCTTTTGTGGAGAAAGATTGCCCTGGGATTGTGACGGAAAAAAACACAAACTGTTGTTTTACCTGCTCCCCTCACAAGGATTTGCACGTTGCAGTGACCTGTACCCCTCCACTTCTCTCTTGTAATCCCTGGAAGAGAGATAAGAGGATGGATGTTGTTTCTCTACTTGACAATCGCTGGGGAGCTCTCCATTTTACAGACGATCTAAAACTCCTTAGAAGAGGACATCCTTACCATCACGTTTTTGTTTTCCTATTTCTGTCTCTGATGTAAGCTTAGTGGGGCAGACGCGAGTTTATCATGTTTTTCCAGTGTGGTGAGACCGAATTCTGGAGCCTAGTTTCTGTATAACTTCCATTTGATTTCTTTGTATGGACTCCACTGACACAGAAGCTAAATAAAACCCTGTGCCCTCCTTCGCCCTGACCACTGAAAAGTGACACATCAAAAGAGCGAGAGATTAGAGGTTAATACCTTTTAAGTgattgaatgtgtgtgtatatacagtgtgtgtacagttgttgtgtatatactggatatgtgtgtgtatatatagtatgtctatgtgtatatacagtttgTTTGTATACGCAGGGTGTACAGTTTTTTCCTCGAtcctctaatctctctccctttctcgtaAATGACATATTTGACTCCTCAAAGAGAAATGTTGGAGTGGAGAGGTTCACACTGGCAATTTAAAGGACAACTGTCTGGGATGCACTTTCTGTGCAGACACTGACCAATCTGACACCTCTGAACACCTACACACCTAATTATGCCTCTCAAAACAATCTCTGGCTTGCACTCATTTTCTCATcaactgaggcatttttaaaaatgatATTTGGGTGACCAAGCAATGtttgtacatatacagtatatagaataACTAAGATAATATTTCCAGTGACCTCCATCTCCTTTTTAAAAATTCCTGTAACTATTAGGATTCTTCCTTGTTATTTGATTTAAGTTTTACGTTCTCTACATTAAATGTTTGCAATGGTTGTCATTCTGATGTATATAATTATCCAGACAACCCTTATCTAATCTTTCCAATTTAGTTCCCCGAACTCTGCCTCTCATAGACCCCTCTGTCAGGCTGAACCTTTGGTTCAGATCACACTGTTACTTGTGAAGCAACTCTTCCATGCAAGTAACACCATGTTATTAGCCATTTCTTCAAGTTCTATTAAGTGTGCCTCCAACTCGCCAACCCTCCCTCACCCTTGAACCTTCAACCCCACAGTTCACTCATAGTCATACCCTTTGACAAGCCATAGTCCCCCAACCCCtctatttttgttttaaaaaGGACAGACATTCGGGGATTTGTGTATATTAATGGAAAGAGTGATATTGAAGAGTGTATTGCCATTGTACATGGATTTGTTATGAATGTGGATATTCTGATGATTTAACTATTATTGTAATAATGATTATGATTATTGCCACTTTGATTTTGTTGATTCATTCCTTTGATGCGGTCAATAACAATTCCTTCATTTCATTTTTGAATAAGCCGGAATTTATATTTTTCGGGTGGGTGAATCTTGGAGATAGAAATACTTAAACAAATGAATAATAAACAAATAATTAACTTCTTAAATTAAGATGTGATATGTATTTTTTGTATCATTCCTACAGAACAGTCACCACAGTGAAAAATATCTTGAAACTCTTAGTAGGCCAGCTGGCCATTTATGAGGCCTATTCTGGGGTCCAAATCAAGAGATATACCGTAGGTTACAGAATCATCATTAGATTATCACTGGACAACCAAAGACGCAGTATGCCAGTAAGATCATAGTAGTCGACGCTACCATAACCAATCACGTTTGCAAATATTATTTGCTGAGGCTGTTGGTGCTTTTCATGTGAGATAAAAGTGAAGACTAGTCTTTTTAGtacgtattcacaccccttgactttttacacattttgttgtgttgcagcctgaatatAACATGGATTcatttgagatgttgtgtcactggccaacaaacaataccccagaatgtcaaagtggaactatgtttttagaaatgtattccaCGCCTTTGTTGTGAAAAGCCTAAATTATTTCAGGattaaaaatgtgcttaaaaagtcacataataagttgcaataatagtgtttaacattatttttgaatgactacctcatctctgtaccccacacatacaaatgATTGTAAGGTCTCAATCTCAATCTCTgcggtgaatttcaaacagagatTCAACCAGAAGGACCAGGGAgattcaccatgaggccaatagtgtCTTTAAAGCAGTTACATAGTTTAACTGTGAAGAAAaccgaggatggatcaacaaattcacctttcagcaggacaattacctaaaacacaaggccaaatatacactggaattgcttaccaagatgacattgaatattcccgagtggcctagttacaattttgacttaaatcggcttgaaaatcaatggcaagacttgaaaatggctgtttagcaatgatcaacaaccaacttgacagagcttgaagaattaaaaaaagaataatgtgcaaatattccacaatccaggtgtgcaaagctcttagagacttacccagaaagactcacagctgtaatcgctgccaaaggttattctaacatgtgttgagtcaggggtgtgaatacacatgtaaatctgatatttctgtatttcattttcaataaatgtgcaacaatttttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272416 lncRNA downstream 5068 24928799 ~ 24931448 (-) True G238414
TU272243 lncRNA downstream 167185 24767203 ~ 24769331 (-) False LOC110515154
TU272244 lncRNA downstream 168255 24767203 ~ 24768261 (-) False LOC110515154
TU272245 lncRNA downstream 171154 24764812 ~ 24765362 (-) True LOC110515141
TU272237 lncRNA downstream 171783 24763706 ~ 24764733 (-) False LOC110515141
TU272527 lncRNA upstream 162894 25129102 ~ 25129653 (-) True G238494
TU272545 lncRNA upstream 183342 25149550 ~ 25149823 (-) True G238509
TU272613 lncRNA upstream 205118 25171326 ~ 25172226 (-) False LOC110515384
TU272627 lncRNA upstream 212428 25178636 ~ 25178846 (-) True G238588
TU272632 lncRNA upstream 222851 25189059 ~ 25189309 (-) True G238593
XM_036973039.1 mRNA downstream 16502 24904264 ~ 24920014 (-) True LOC110515194
XM_021594179.2 mRNA downstream 42603 24884628 ~ 24893913 (-) True LOC110515183
XR_005039843.1 mRNA downstream 91803 24843450 ~ 24844713 (-) True LOC118944507
XR_002472214.2 mRNA downstream 111380 24819843 ~ 24825136 (-) True LOC110515174
XM_021581795.2 mRNA downstream 121049 24808425 ~ 24815467 (-) False LOC100305168
XM_036964708.1 mRNA upstream 92386 25058594 ~ 25072664 (-) True LOC110515238
XM_021594242.2 mRNA upstream 135185 25101393 ~ 25106636 (-) True LOC110515290
XM_021594249.2 mRNA upstream 141614 25107822 ~ 25111116 (-) True LOC110515302
XM_021594265.2 mRNA upstream 152975 25119183 ~ 25125442 (-) False notchl
XM_036973053.1 mRNA upstream 152975 25119183 ~ 25125442 (-) False notchl
TU272241 other downstream 166193 24769704 ~ 24770323 (-) True LOC110515154
TU272242 other downstream 166545 24769562 ~ 24769971 (-) False LOC110515154
TU271769 other downstream 414972 24521219 ~ 24521544 (-) True G237832
TU271573 other downstream 752552 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 752962 24180556 ~ 24183554 (-) False G237657
TU272614 other upstream 232880 25199088 ~ 25236367 (-) True LOC110515384
TU273578 other upstream 857148 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 1602893 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 1708384 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 2104847 27071055 ~ 27075883 (-) False LOC110516631

Expression Profile