RNA id: XM_036964708.1


Basic Information

Item Value
RNA id XM_036964708.1
length 2004
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110515238
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25058594 ~ 25072664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCACTCTATCTCTCGGTGTTTTATGTCTGCGTCACAACAAGTCGGTcgagaaagaggcagggatgATGGCGTCTCTCGCGGGTTGATTCTCGTGCTGCTCTGACAAACACGCCTAATAGCATCAATAGGTGGAGAAACGAGAGCAAAGGCAAGGGAACATGACGAAACGACGTCGCggaggacagacagaccgagGGAAAGACGGACGTACCGACGGTGTCTCACTGACGACTTGACTGACATACGCGCttggcacagacacatacatgcacatcCACTTTGGCACACACGTAGGCTTCACATCCAACCGGCCAGTAATTGAGACGAGAGGAAAACAGAAGAGATAAAATATTTCATGTCAAGCCGGCACAGGAATCGCTGTGACCCCAACGGAGAGGAGTTCGACTTGACAGGATGGGGGGAGTAAGTGAAGGGGATGATGTGTTAGCTCGATGGAGTGATGGACTACTGTACCTCGGTAATGTGAAAagagTAGATGGAGTCAAGCAGTGTTGTCTGGTGAGATTTGAGGACAACTCGGAATTCTGGGTCCTAAGAAAAGACATTCACTCTTTCTCAGTTGGAGTGGAagaggtttgctgtgtctgtgatGCCCCGCCTCTTAAAGAACCTctcatcaattgtcttaaatgtCGTCACGGTTATCATCCTGAGTGCCACACTCCGTCCATTGAGCCGGAAGCTGACAGCAATTCTTGGATATGTCGGCAATGTGTCTTTGCAGTGGCAACCAAGAGAGGGGGAGCCATCAAACGAGGACGGTTTGCCCGGCTCATGCAAATCATGAAACTTCGGCTGCCCTATCAGCTGTCATCTTTAGACTGGGACCCACAGCATCTGACCAACCAGCAGcagtgttactgctactgtgccGGACCTGGAGAGTGGAACCTGAAAATGTTGCAGTGTGGAAGTTGTGGTCAGTGGTTTCATGAAGCTTGCACACAGTGTCTGACCAAGCCGTTGTTATATGGAGACAGGTTTTATGAGTTCCAGTGCTCAGTCTGTGCAAGCGGACCAGAGACAATTCAACGGCTACCCATGAGCTGGGTAGATTTGGCCCATTTGGTGCTCTACCACCTCTCCTTGTGCTGCAAGAGAAAATACTTTGATTTCGACCATGAAATCATGTCGTTTGCCAATGAGAATTGGGACTCTTTGCTTCTCGGCTCGctctctgaCACACCAAGGCAAGATCGCTGCCACAATCTGCTCAACGCTTTGAACTCCAACAAAGACAGGTTTGTCTCTGGTAAAGAGATCAAGAAGAAGAAGTGTCTTTTTGGGCTCCAGGTCCGAGCTCCGCCTCCCCTGACCTCTGATTCGTCTCCCCTCATCACTGACCCGCCCATCAACATCACCCAAAGGAGAAGCCCATTGTCACTGCCCTGCCAGAGGAGAGCGGTGGGGCCAGAGTCACGCAAATCAAAGCGGCGCATCATGGAGACACAGCCTTGTCCGCCCCCGGTCCCAGCCACCCCAATAGATCTTGTGCCATGTTGCCATGGCTACGTAGGTGGAACTAACCTCTACAACTCCAGGAAGTCGGAGGAGGAGCTGAATTTGGGCTCTCCACCTAAGCGGATGTTTGCCCTGTATCACCCCACCTATAACGGCGCCCCAGCCATCTCCAGAACCCTGCATCACTATAGtgcGGAAGATCCTTGTCGAGTGCCGCCCCCCTgcctccccttctccctgtcatcctcccaccatcaccaccaccaccatcacaaccaccaccaccaccagcagcagcaCCACCAGCACCAGCCTGGCCAGAAGTTGGatccctgcccctccctcctgCTGCGTGACGTCCCTTCCTATCCGGGCAGCGTGGGGGGAGGGGGCGGGGGGGATGGGTCAGCTGTCAGGGGCTGGGGGGGTGGGGACGGGGTGAGGATTTTGGCGAGGCGAGTAACGCCAGACGGGAAGGtccagtacctcgtggagtgggggAACGTGAGTGTGTactga

Function

GO: NA

KEGG:

id description
K11467 PHF1, PCL1; PHD finger protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272416 lncRNA downstream 127146 24928799 ~ 24931448 (-) True G238414
TU272243 lncRNA downstream 289263 24767203 ~ 24769331 (-) False LOC110515154
TU272244 lncRNA downstream 290333 24767203 ~ 24768261 (-) False LOC110515154
TU272245 lncRNA downstream 293232 24764812 ~ 24765362 (-) True LOC110515141
TU272238 lncRNA downstream 294123 24763706 ~ 24764471 (-) False LOC110515141
TU272527 lncRNA upstream 56438 25129102 ~ 25129653 (-) True G238494
TU272545 lncRNA upstream 76886 25149550 ~ 25149823 (-) True G238509
TU272613 lncRNA upstream 98662 25171326 ~ 25172226 (-) False LOC110515384
TU272627 lncRNA upstream 105972 25178636 ~ 25178846 (-) True G238588
TU272632 lncRNA upstream 116395 25189059 ~ 25189309 (-) True G238593
XM_036973040.1 mRNA downstream 5624 24937629 ~ 25052970 (-) False LOC110515208
XM_036973041.1 mRNA downstream 5624 24937629 ~ 25052970 (-) False LOC110515208
XR_005042057.1 mRNA downstream 5624 24940100 ~ 25052970 (-) False LOC110515208
XM_036973042.1 mRNA downstream 5625 24937629 ~ 25052969 (-) False LOC110515208
XM_036973044.1 mRNA downstream 5625 24937629 ~ 25052969 (-) False LOC110515208
XM_021594242.2 mRNA upstream 28729 25101393 ~ 25106636 (-) True LOC110515290
XM_021594249.2 mRNA upstream 35158 25107822 ~ 25111116 (-) True LOC110515302
XM_021594265.2 mRNA upstream 46519 25119183 ~ 25125442 (-) False notchl
XM_036973053.1 mRNA upstream 46519 25119183 ~ 25125442 (-) False notchl
XM_036973054.1 mRNA upstream 46519 25119183 ~ 25125442 (-) False notchl
TU272446 other downstream 92386 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 106412 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 111589 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 288271 24769704 ~ 24770323 (-) True LOC110515154
TU272242 other downstream 288623 24769562 ~ 24769971 (-) False LOC110515154
TU272614 other upstream 126424 25199088 ~ 25236367 (-) True LOC110515384
TU273578 other upstream 750692 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 1496437 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 1601928 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1998391 27071055 ~ 27075883 (-) False LOC110516631

Expression Profile