RNA id: XM_021594242.2


Basic Information

Item Value
RNA id XM_021594242.2
length 1694
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110515290
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25101393 ~ 25106636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGACCAAAAGCCCGCCCCGTGACATCATACTTCAAAACAAGGATGCATCTCAAATAAAGAAATGGAATCGTTCGCCACAATCGAAGATCACGTGGATACGGAAAAAGCTGTAGAATCAGCGCCCTTGTCAAATTCTTATCTACTCAAAGATGTTGTCACTTGTTGTCCTGATGATCCTGTTTCAACCAGAAGAGGGAGGCTCCTCACCTATCTCCTGTTACAATGATCAAGGGGAAGCTGTTGACTGGTTCTATCTCTACAAACTCCCCCATGTTGATCGtgaatttcccaatgatggacaGAGTTATCTACTGATGGACAAAGGGAGCGAGGGATGGACGGATGGAAATGTGTTGGTAAATGACAGCACTGGAGCCCTGGGGAGGACAGTGGGCCAGCTGTATGAGCAGGGGAAGAATGGTGACATTGCATACATCCTGTACAATGACCAGAGACCACCCGAGGAGGGAGAAAAAGGATTTGATTTCCTTAGTAGCCGAGGTGGCCACACCAAAGgtGTTGTCTTATTGGACAAGACACAGGGCTACTGGTTGGTCCACAGCACCCCTAATTTCCCCCCTGTAAAGGAAATGGGGCAATATTCCTACCCAGGTAGTGGTGTACAGAACGGACAGAACTTCATCTGTGTGACCTACCCACTGGAGCGCTTTCAGGCCATTGGAGAGCAGTTGCAGATCAACCAGCCCAATGTGTATGACTGCGGTGTCCCTGCTTCCTTGGCCTCTCTGGTGCCCGCACTGGCTGACGTCTGTAACAACAGCCAAGGTCAGATGGCCTATAGCAGCTTACTGCACACCCAACCTGCATCCAATCGCAGCGTGTCTCTCACCTCATTGGGTGGAACCGAGTTCATCAGCTTTGCCAAGGGGAGAGCATTCAATAATGATCTGTACCACTCCTGGGtggctccctccctccagtcaGACCTCCTAGTCCAGTTCTGGATCCGCTCCCCTGGCATCCTGCCCTCTGACTGCTCCCTGGGCTGGAAGGTCCTGGACATCCAGCTTATCTCCCCAGGCGGGAGGATCACCTTCAAGGCCTCCAACGACCACTCCAAGTGGGCCGTGAGTACCACCGGGGGTGGGTTGGATGGAGCTgctggctgggtgtgtgtggGCGACATCAACCGGAACGAggctgaggagaagagagggggcgGGACGGTGTGTCTGCAGGACGCCACGGTGTGGAAGGCCTATCGGACAGCGGCGCTGGAGTGTGAGATGTGCGGGGGAGGGACTAGCGGGTGTGATGTGGACGTAGAGGATGCAAGGCACTACCAGGGAGATATGAATCAGTAAGCATCAGTGTAAAGTTACTAGTATGCACACAGTTCACTGAGCAGGTAGGTGTATTAGTATTATTGAGCTCCATGAACAAGGTACCCCATAGAATGTTGATTAATAAGGTACCAGAATCTAATTcactttttttatggcagttttggagtgTTTCATAAATTGCCATGAATAGAAACATACTTGAAAGGGAAGTGGCACTCCTGTAATCATTAAACAATGATCATTTTGATGCACGCTATGTAGTTCTATAAGTTGCTAATGACTGTAGGCAATGTTGATTGTGATCTCAggtatgtttttagacattttatgTGTCTGTTTTCAACCTTTTTTATGTGACaaatgataaaaataaaaaaaagattgt

Function

GO: NA

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272416 lncRNA downstream 169945 24928799 ~ 24931448 (-) True G238414
TU272243 lncRNA downstream 332062 24767203 ~ 24769331 (-) False LOC110515154
TU272244 lncRNA downstream 333132 24767203 ~ 24768261 (-) False LOC110515154
TU272245 lncRNA downstream 336031 24764812 ~ 24765362 (-) True LOC110515141
TU272238 lncRNA downstream 336922 24763706 ~ 24764471 (-) False LOC110515141
TU272527 lncRNA upstream 22466 25129102 ~ 25129653 (-) True G238494
TU272545 lncRNA upstream 42914 25149550 ~ 25149823 (-) True G238509
TU272613 lncRNA upstream 64690 25171326 ~ 25172226 (-) False LOC110515384
TU272627 lncRNA upstream 72000 25178636 ~ 25178846 (-) True G238588
TU272632 lncRNA upstream 82423 25189059 ~ 25189309 (-) True G238593
XM_036964708.1 mRNA downstream 28729 25058594 ~ 25072664 (-) True LOC110515238
XM_036973040.1 mRNA downstream 48423 24937629 ~ 25052970 (-) False LOC110515208
XM_036973041.1 mRNA downstream 48423 24937629 ~ 25052970 (-) False LOC110515208
XR_005042057.1 mRNA downstream 48423 24940100 ~ 25052970 (-) False LOC110515208
XM_036973042.1 mRNA downstream 48424 24937629 ~ 25052969 (-) False LOC110515208
XM_021594249.2 mRNA upstream 1186 25107822 ~ 25111116 (-) True LOC110515302
XM_021594265.2 mRNA upstream 12547 25119183 ~ 25125442 (-) False notchl
XM_036973053.1 mRNA upstream 12547 25119183 ~ 25125442 (-) False notchl
XM_036973054.1 mRNA upstream 12547 25119183 ~ 25125442 (-) False notchl
XM_036973057.1 mRNA upstream 12547 25119183 ~ 25125442 (-) True notchl
TU272446 other downstream 135185 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 149211 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 154388 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 331070 24769704 ~ 24770323 (-) True LOC110515154
TU272242 other downstream 331422 24769562 ~ 24769971 (-) False LOC110515154
TU272614 other upstream 92452 25199088 ~ 25236367 (-) True LOC110515384
TU273578 other upstream 716720 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 1462465 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 1567956 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1964419 27071055 ~ 27075883 (-) False LOC110516631

Expression Profile