RNA id: XM_036973080.1


Basic Information

Item Value
RNA id XM_036973080.1
length 1812
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110515353
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25112639 ~ 25119442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGATTACTCGTCCGCGCCACTGTGTGCCGCTCAGGATGTTGCAGCAGCAGCCTCTCACTGGCAACGGGCCCTCTAACGGCCGGGGCCTTGGCCTGAGCTCTCACCCCGGTATGCACCCTCTAAACTCGGTTCATCCATCTTCCCACCACCGCTCCGATGGAGACACGGGCCACGAAGGCGCAGAAAATGGACATGAAAGCCGCAGAGACATTGGTGACATATTGCAACAAATTATGACCATCACCGACCAAAGTTTGGACGAAGCACAAGCAAAGTTAAAAACACGCATTGAATTGCCATCGAATGAAACCAGCTTTGTTCAGCGTCTTATGCGAGATCAAAGAGAAAACGGGCCTATCAATGCGAAATGCTCAGGAGGAAGAATCACAGGACCCACAGCTGGTGCGATTGGACAACATGCTGCTGGCGGAGGGTGTGGCTGGGCCGGAGAAAGGTGGCGGGGCGGCAGCGGCGGTGTCCGCAGCCACCAGCTCTGGAGGCATGTCTCCAGACAGCTCACTGGAACACTCAGACTACAAAAGCAAGTTGAGCCAGATTCGCAACATCTATCACACTGAGATGGAGAAATATGACCAGGCCTGTAGTGAGTTCACTACCCACGTGATGAACCTGCTGAGGGAGCAGTCACGTACACGACCCGTGTCACCGCGGGAGATTGAACGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGACACAACTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTGAGGTCCCGCTTCCTCGACGCCAGGCGTAAGAGACGTAACTTCAGCAAGCAGGCGACGGAAGTCCTGAACGAGTATTTCTACTCCCATCTCGCCAACCCTTACCCCAGTGAAGAGGCCAAAGAAGAACTCGCCAAACAGTGTAGCATCACTGTCTCTCAGGTGTGCAACTGGTTTGGCAACAAGAGAATCCGCTACAAGAAGAACATCGGGAAGTTCCAAGAGGAGGCCAACATCTATGCCATGAAGACGGCCATCGTGGCGACACAGAACGAGGACTCTCCACACACGCCCAACTCAACAGGATCGGGGGGCTTCTCACTCACTGGACCAGACCTTTTCCTGGGTGTTCCACCAATGAATGGAGAGCAGCCTGTCTACATGGGAGCACAAACTAATGGGAACTGGCAAGGGCAAAACACGCCCCCCTCTGCCACTTCCCCGGGAAACGACCACTCGGGGGACTCTGACTGATGGCCCCACCCCCTTTGGGTCGATGACATAGATGGAAAGATTGACAACGAAGAAAGAATGATATCACCCTTACTTGGCTGCAGTTTTTTGTATGTCCTTTCTGTTTCTTACTGTCCAATGATACTGTTCATTATGTTTGTATGAGCTGAATGTGTGatttttgtgtgagtgtgtgtgatgttttgtaTTGGGATCGTGGGTTTTTGTTTTCCACAACTTTATATGTTACTGTGGTATGTAGGCAGGGAGGCTTGGGAAATTGCGTTACCATTGTTTTATTAGGCTATATTATTAATGCTGTTATTACAAATATTTTAGGATTTTCGTTTAAAGCTCAGATATAGTTGCATTTAGAGGATGTGGGGGCAATATAGAAAATCCAAAGATTTAGTGTGTTTGTTTTCTCTTTTCTACTGGgcttgtttgtctgtgtgtctatatcatgaatgaagtgtgtgtgcTGGTTATATTAACAGTTTGAATGAGTATATCAACAGTGCTGTCATTCTGTACAGTGAGTGAAAAACACCTGTATTCTCTACCTCTTTTACAATAAAGTCTCTGTATTCACA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030901 midbrain development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272215 lncRNA upstream 2078 25109122 ~ 25110592 (+) True G238238
TU272089 lncRNA upstream 159195 24937604 ~ 24953475 (+) True G238129
TU271987 lncRNA upstream 207153 24904299 ~ 24905517 (+) True G238029
TU271991 lncRNA upstream 227209 24854769 ~ 24885461 (+) True G238033
TU271986 lncRNA upstream 303790 24808437 ~ 24808880 (+) True G238028
TU272167 lncRNA downstream 904 25120346 ~ 25120658 (+) True G238196
TU272165 lncRNA downstream 1430 25120872 ~ 25121188 (+) True G238194
TU272168 lncRNA downstream 3210 25122652 ~ 25122955 (+) True G238197
TU272169 lncRNA downstream 3691 25123133 ~ 25123346 (+) True G238198
TU272166 lncRNA downstream 4024 25123466 ~ 25123783 (+) True G238195
XM_036973048.1 mRNA upstream 11452 25076339 ~ 25101218 (+) False LOC110515267
XM_036973049.1 mRNA upstream 11452 25076339 ~ 25101218 (+) False LOC110515267
XM_036973050.1 mRNA upstream 11452 25076340 ~ 25101218 (+) False LOC110515267
XM_036973052.1 mRNA upstream 11452 25084094 ~ 25101218 (+) True LOC110515267
XR_005042058.1 mRNA upstream 136186 24974626 ~ 24976484 (+) True LOC118948035
LOC110505167 mRNA downstream 7737 25127179 ~ 25135494 (+) False LOC110505167
XM_036963280.1 mRNA downstream 18314 25137756 ~ 25147306 (+) False LOC100136302
XM_036963272.1 mRNA downstream 18330 25137772 ~ 25147306 (+) False LOC100136302
XM_021581557.2 mRNA downstream 18742 25138184 ~ 25147306 (+) False LOC100136302
XM_036963262.1 mRNA downstream 18742 25138184 ~ 25147306 (+) False LOC100136302
TU272008 other upstream 336725 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 346307 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 362287 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1057003 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 1183583 23908750 ~ 23929087 (+) True LOC110514733
TU272577 other downstream 75845 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 421327 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 1094200 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1207966 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1207966 26327408 ~ 26328025 (+) True G239752

Expression Profile