RNA id: LOC110505167


Basic Information

Item Value
RNA id LOC110505167
length 2394
RNA type mRNA
GC content 0.55
exon number 12
gene id LOC110505167
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25127179 ~ 25135494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCATTATCTATCTGTCCCAAACTCCTGTTCTAAAGCCTGTTCGGAATGCCGAAAATGAACTTCTCTCCACTGCTCTTCCTgtgcatggatgtgtgtgtggtgcagaCAGTCCGCTTGGCccaactctcccctctcctcctcccccatcccctcATCACCTTGTGGGGTGGAAGCCTGCTCCGTGCCGGCCTCCACCTCTTTCTCACCTTCACGTTCCCTGGAAGTCCCCTATGGATGAGCAGCTTCGAGGGGCTCCAGAGCATGGGGGTCCTCTGCTTCCATTGCTCTTCcattatatattaatatatataccCTTTTTGTTTTAAAAATGGATAAACCAAACAAACTAAAATCACTTGTTTTTCAGCTACTTTAGGGCTACTGCGTAACAGTCGTAGCATGGTTGTACTGGACACGCTACGTCCCTTCTCTTCTTACCAAGCCCACCAAGGAACCACAGAAGAAGACTGGGgcatctctagagaaactgatGGGATACATGAAGCCTTATATCATACGCTTTGGAGCTGTGCTGAGTCTTGTCGTCATCTCTTCCCTTGGTGAGATGGCTATTCCCCACTACACCGGCCGAATGACTGACTGGATTATGAATGAAGACGAGTCTGAAGCCTTCACTTACGCCATCACGGTCATGTCTCTGATTACAGTCATGAGtgctgtgtgtgagtttgtgtgttaCCTCATCTACAACATCACCATGAGTCGCATACACACCTCCCTCCAGCGCCTAGGCTTCCAGTCGGTGCTGAAGCAGGAGATCCCTTTCTTTGGCAAAGCTCAGACAGGTGACCTTGTGTCACGCATCACCACGGACACCAACGACATGAGTGAGTCTCTGAGTGAGAAGTTGAGTCTGCTGATGTGGTACTTCATGCGGGTCACTTTCCACTTCATCTTCATGCTCACCTCTCCTGGAAGCTGTCACTCTTCACCGCTATGGGGCTTCCTATCATCTGGGTCATACCAAAGATACCCGGCAAGTGGTACCAGAAACTCGGTGCGAAGGTTCAAAAGTCACTAGCCCAGGCCAATGACGTTGCCACGGAGACCTTCTCCTCTATGAAGACAGTACGCAGCTTTGCCAATGAGGAGGGCGAGACGGAGCGCTACAGGAAGAGGCTGGAGAAGACCTACTCTCTGAATAAAGAGGAAGCAGCAGCCTACGCAGCCTCAATCTGGACCAATAGCaTGTCAAGCCTGTTCCTGAAGGTCAGTATCCTGTACTATGGCGGCAGTCTGGTGACAGGGGGGGCCGTCAGCAGTGGGGACCTGGTGGCCTTTGTGCTCTACGAGCTCCAGTTCTCCTCTGCTGTGGAGACCGTGATGTCGTGTTACCCAAGTGTGATGAGGGCAATCGGTGGCTCTGAGAAGATATTTGAGTATGTGGACAGCCCCATGTTCCTCCAGAAGGCACCTTTTCCCCACAGAAACTTATGGACATATGTTCAGTTCAAGAATGTCATATTTACCTACTCTACCAGGGAAGATACACCTGTGCTCaagGGCCTGTCTCTGGAGCTGAGACCTGGGCAGATCACTGCCCTTGTGGGGGCTTCTGGAGCAGGGAAAAGCACCTGTGTGAGCCTGCTGGAGAGGTTCTACCTGCCCCAGGAAGGAGAGATCTTATTGGATGGACAGCCACTGAACAGCTACAAGAACCAGTACCTGCACGACCAGATCAGTGTGGTGAGTCAGGAGCCGGTGTTGTTTGCTCGTTCTGTCAAGGAGAACATCAAATaccctgcctATGATGCCACTGATGAGGAGATGTACCGGGCTGCTGAGCTGGACAACGCCCACAAGTTCATCTCTGACCTGCCCAATGGCTATGATACAGATGCCGGGGAGAAGGGAGGCCAGGTTTCAGGAGGGCAGAAGCAACGCATTGCCATCGCCAGAGCTCTGATCAGACAGCCTCGGATTCTAGAGCTGGACGATGTCACCAGTAACTTGGACACAGAGAGCAAGCATTTGGTCCACCAAGCTCTGCTCAACGATTCATACCCCTGCTCAGTGCTGCTGATTGCTCATAAGCTGAGCACTGTGGAGAAGGTCAATCACATTGTCATTCTCGAGGAGGGAAAGGTGCTAGAGGAGGGGGGCCATGTTGAGCTGCTGGAGAAAGGTGGAACCTATGCTGATCTGGTGAACAGGCAGAACACTTTCTATTTGCACTATAGTGTAACTAAAGTATTCTTTCTGCCCCAAATgccttttgtatttattttgactTTTATTTTTGTTAAATTGTTCTCCCACATTTGTGTTctaactatatacagtggggcaaaaaagtatttagtcaaccaccaattgtgcaagttctcccacttaaaaaATTGCAGCCGGAAGCAACAAGAAGCGCTGtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272223 lncRNA upstream 502 25126361 ~ 25126677 (+) True G238243
TU272170 lncRNA upstream 1782 25125077 ~ 25125397 (+) True G238199
TU272166 lncRNA upstream 3396 25123466 ~ 25123783 (+) True G238195
TU272169 lncRNA upstream 3833 25123133 ~ 25123346 (+) True G238198
TU272168 lncRNA upstream 4224 25122652 ~ 25122955 (+) True G238197
TU272542 lncRNA downstream 12001 25147495 ~ 25147745 (+) True G238506
TU272555 lncRNA downstream 39296 25174790 ~ 25175404 (+) True G238519
TU272557 lncRNA downstream 40840 25176334 ~ 25176607 (+) True G238521
TU272561 lncRNA downstream 43290 25178784 ~ 25179166 (+) True G238524
TU272562 lncRNA downstream 44093 25179587 ~ 25179819 (+) True G238525
XM_036973070.1 mRNA upstream 7737 25112639 ~ 25119442 (+) False LOC110515353
XM_036973080.1 mRNA upstream 7737 25112670 ~ 25119442 (+) True LOC110515353
XM_036973048.1 mRNA upstream 25961 25076339 ~ 25101218 (+) False LOC110515267
XM_036973049.1 mRNA upstream 25961 25076339 ~ 25101218 (+) False LOC110515267
XM_036973050.1 mRNA upstream 25961 25076340 ~ 25101218 (+) False LOC110515267
XM_036963280.1 mRNA downstream 2262 25137756 ~ 25147306 (+) False LOC100136302
XM_036963272.1 mRNA downstream 2278 25137772 ~ 25147306 (+) False LOC100136302
XM_021581557.2 mRNA downstream 2690 25138184 ~ 25147306 (+) False LOC100136302
XM_036963262.1 mRNA downstream 2690 25138184 ~ 25147306 (+) False LOC100136302
XM_036963264.1 mRNA downstream 2696 25138190 ~ 25147306 (+) False LOC100136302
TU272008 other upstream 351234 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 360816 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 376796 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1071512 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 1198092 23908750 ~ 23929087 (+) True LOC110514733
TU272577 other downstream 59793 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 405275 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 1078148 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1191914 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1191914 26327408 ~ 26328025 (+) True G239752

Expression Profile