RNA id: XM_021581557.2


Basic Information

Item Value
RNA id XM_021581557.2
length 4377
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC100136302
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25137756 ~ 25147306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTTTATAAAGCGGCAGGCGGTAGCTTTTCGGCGCCATTTCATTGTAGAACTGTTCGGCTTTTATTTAGTAGAAACATAACAGTGGACAAATTTGGAACATAAAAAGAATCCGGATCCATCCTGATGGAAACGGCCGTTAACCCGCCCCTTGACAGCAGCTCTCTGGGAGTGGTGGGGCTGTCTGGCGGCGGGATGGAGCACCATGCCTCGGGCCAAGGCAAGCGCATGCGGAAGCCCTCGCTGCTGTATGAAGGCTTTGAGAGCCCCCAGCTGCCGTACGCGCCGCCCCCTCCCCCGGTCCAGCCCCCCGTCAGGGACCCCGGCCGGCAGGGCTGCATGACCAACCAGCTGCAGTTCCTCCAGAAGGCTATGATCAAATCCCTGTGGAGGCACCATTTTGCCTGGCCATTCCATGAGCCAGTGGATGCCTTCAGACTCAACCTCCCAGATTATCACAAGATCATCAAGCAGCCCATGGACATGGGAACCATCAAGAAGCGGCTGGAGAACAACTACTATCGCAGCGCCAGTGAGTGCATGCAGGACTTCAACACCATGTTCACCAACTGCTACATCTACAACAAGcCCACAGATGACATAGTGCTGATGGCCCAGTCCCTGGAGAAGGTGTTCCTGCAGAAGGTGGCCCAGATGCCCCAGGAGGAGATTGAGCTGCCCCCTCCTGCCCCCAGGGGCAAACCGGGCAAGCCTGGCAAAGGAGGCCGCAAGTCCAACGCGTCAAAAGCTCACCAGGTCCCTGCGGTGTCCCAGTCAGCATACTCCTCCTCTGACACGGGTGACTCAGACACCCCCCCTCTGACCATGCTGCCCAAGAGTCTGCCCCCCACACAGCTGCTGAGCCTGCCCCCCACACTGCCCACCGCTAAGAAGAAGGGAGTGAAGCGGAAGGCGGACACCACCACTCCCTCCACCATGATAACCATGCCCCTGGCCGTAGGAGGGGGTCGGATGGTGGGCCTGGGGAAAGGAGGCCACGGGCAAGGCCTGAGCCAtgacccctccaccctctcccttaCCTCCCTGGGGGACATGGACCCCCCTCCCAGCCTGGTTAGAGGACCCATGGGCCCAGGGGGCCCCGTTCtgctccagcccatgatggctgGAGGCGGGAAGACCCTGGCTCGGCGCGGTGGCAGTGGACGCCCCATCAAGCCCCCCAAGAAAGACTTGCCGGACTCTGTGCAGCCAAAGGCGCCACGGCGGGCCAAGCTGAGTCAACAGCTGCGTTACTGTAGCAGCGTGCTGAAGGATCTGCTGTCCAAGAAACACGCGGCCTACGCCTGGCCCTTCTACAAGCCCGTGGACGCCTCGGCCCTGGGCCTGCACGACTACCACGACATCATCAAGTGCCCCATGGACCTCAGCAACATCAAGAGGAGGATGGACAGTCGGGAGTACAGGGATTCGCAGCAGTTTTCCGCTGACGTCCGACTCATGTTCTCCAACTGCTACAAATACAACCCCCCCGACCATGACGTGGTGGGCATGGCCCGCAAGCTGCAGGACGTGTTTGAGTTCCGCTTCGCCAAGATGCCTGACGAGCCCCTCCAGCAGGCTCCTCCCAAGTCCCGAGGCATGGGCGGTGGCATGGGCACTCACGCTCATGGCGGCGGTGACTCCTCGTCTTCGTCGTCAtcgtcgtcctcctcctcctcgtcggaGAGCGAGCccagcagcgagagcgagagcAGCTCGGACAGCGAGGAGGAGCGAGCACACCGCCTGGCCGAGTTACAGGACCAGGTGTGTACACAGCTCCGAGCCGTACACGAGCAGCTGGCAGCCCTCTCCCAGGGCCCAATTGTcaagaacaagaagaagagagagaagaaagacaagaaggagaaaaagaagaagaagaagccggAGAAGCGAAGCCGAGGACGGCCCAGCACGGTGGTAGGGGGTGAGGACTGGGAGATGCCGATGACCAAGCCGGTGAGGACTCCGAAGAGTAAATCCAGTAGCAGGAGCTCAGCTCCCGCCTCCTCACAGGGCAAGAGAGGCCCTGGCAAGAAGAAGGGCAGCAAAAACACCAAGAAGTCCCAGGCTGCTACCATGCCCTACTACGCCCCGCCTGCATTCTCCATGCTGCCCCACTATGActccgaggaggaggaggagacgtcTCCCATGTCGTACGACGAGAAGCGCCAGCTGAGCCTGGACATCAACAAGCTGCCCGGCGAAAAGCTGGGCCGCGTCGTCCACATCATCCAGTCCCGCGAGCCCTCGCTGCGCGACACCAACCCCGAGGAGATCGAGATCGACTTTGAGACGCTCAAGCCATCGACGCTGCGCGAGCTGGAGCGCTACGTCATGACGTGCCTGAGGAAGAAGCCCCGTAAGCCCTATGTGAAGAAAGGGGGCCCCGGCAAGTCCAGAGAGGAACTGGCCCTGGAGAAGAAGAGTGAGCTGGAGAGGAGGCTGCAGGATGTCAGCGGACAGCTCAACTCTGGCAAGAAACCCCAGAAACCCAAGGCGGAGAAGCTCAGTGGCGTGGAGCCTCACGCCCAGCCCTCCCGCCTCAGTGGCAGCAGCTCCAGCTCggactcttcctcctcctcgtcatcctcctcctctgacACCAGCGAATCAGACTCGGGTTgatgagacagtgggagagggagggaacccccccccgtcccccgtcGAGCTCAGGGACATGTGGCAGCCCCAGGACGAAGTCTCCTGGGACAGTCAAGGGAGGGAAAAGAGTGCCCCTCTCTTGAAAGGCACCCCAGCTAGAACAATCCAAGATGAATGATGGTGGGATTAGGGTGGAGGACACGTGATGGTCACTAAAGATACTGAAGACCAGAAACATATTGAGAGTTCAGCCAGGTTTAAGAACGGCTGCCATGTTAGAGCCTTTATTTTTGAAATGTTGGTAATATGACAATACGAGAGCGCCTCTGACAGTTCCCTCTGAAATGACCATTCAGGATGATGTATATCCAAGTCTTTACTGTGTTGTGGTGTCAACAAATTGCATATCTGCTTTCACTGGACATCTTCATAGCTTTTGAAACTATCAGAAATAAACAGCGCAGAAGCGTCAATCATCACTTACAACGGCTATGGAGGAGGAAGTGGTGCTCTCGGAATGTTCAGACAGAAACCGCATCGGACCAACTGACTGCACAAGACCCCCAACACAAACGCCTTgttatccctctcctccctgtgtaAATACTTGTACAATTTATCTATGTTTCTTTTATAAAGAATAATTTTATGGCGATCCCCCAAAGAGGGAGACTGAGGAGTAGTGAAAGGATGTGGAGAGATGTGCTCAGCCCCATGTTAGACACTCTTGATGTGCAATCATAGATTGATAAGAACTGAATGGGTATAAGCAGTATGGCAGAAACCCCACTTTGCCCTTCCGGAAAGCTATGTGGAGTGAGTATTGTAATGCTTACACTTATCTGTTCTCTCACTACGAGGCCGTCACTGTCTAGTggtcaattttttttttagatctGGTAGTTGTCTTTTCTGTCAAGTCTTATAGCTGTAGTCACGAGTCGGtactttttgttgttgctttgttTCATTTTACATCTGTTCTTACTGCTTACAGACCAACATTCAGCTGGATATAAAGTTCAGAGGCAGGAGAGTTTTATTTCCATTCCATATGTTACTCTTGAGAGATCTAACTAATGAAACGTGTTCTACATGTATGGCACTTACCATTAAGAAACAGCCCGTGTGTCATTTCTCAGGAAAGGAGTGGGTTTCTTGATGGTGACACTGCAGTCTTAATCACAGCGGTCGTAGAAACTGATCGGTTTGCAGTTCTAAGCCACtctgttcattctgtttgtgcttAAAGGAAAATTCTCCCAATCATTTGTAATTTTGTTTCGTTAGTCCACTGTTAATACAGTTCCACAATGTTTTGTAGGTCAGCCATAACGTTTTATAACATAGAACATTCAGAATACAGTCAGTGTCACAGTATGATGTGCTTTGTAAGCGAACTGTTGGTTAGCTGTTACATCACCATGTACACAGGAGCAGACATCCTACGTTGAAGTCTGGACCAAGAGATAGACCAGATGAGATGTATAGAAGCTAGGCTGTTAGATCTCTAaggaaattgtgtgtgtgtgtgtgtatatatgtatagtaCTGTATTTCAGTGTTTCTTTCTACCAGTGAGTCTATTTTCCTGTCTTGCTTTTCTTTTATACTCTATATTTATCCTCCTCCGcttagtcatgctttattattCCAGAACATGTCCTGAACATTGTTTTGCCTCCTGGTTGACTGGCATGCTTCTGAGCAGCAATCCAGTCATTTGAAAATTGTATATATTAAAATGAGACCTTCTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272231 lncRNA upstream 4943 25133040 ~ 25133241 (+) True G238246
TU272230 lncRNA upstream 7090 25130591 ~ 25131094 (+) True LOC110505167
TU272223 lncRNA upstream 11507 25126361 ~ 25126677 (+) True G238243
TU272170 lncRNA upstream 12787 25125077 ~ 25125397 (+) True G238199
TU272166 lncRNA upstream 14401 25123466 ~ 25123783 (+) True G238195
TU272542 lncRNA downstream 189 25147495 ~ 25147745 (+) True G238506
TU272555 lncRNA downstream 27484 25174790 ~ 25175404 (+) True G238519
TU272557 lncRNA downstream 29028 25176334 ~ 25176607 (+) True G238521
TU272561 lncRNA downstream 31478 25178784 ~ 25179166 (+) True G238524
TU272562 lncRNA downstream 32281 25179587 ~ 25179819 (+) True G238525
LOC110505167 mRNA upstream 2690 25127179 ~ 25135494 (+) False LOC110505167
XM_036973070.1 mRNA upstream 18742 25112639 ~ 25119442 (+) False LOC110515353
XM_036973080.1 mRNA upstream 18742 25112670 ~ 25119442 (+) True LOC110515353
XM_036973050.1 mRNA upstream 36966 25076340 ~ 25101218 (+) False LOC110515267
XR_005042063.1 mRNA downstream 9070 25156376 ~ 25161150 (+) False LOC110515374
XR_005042061.1 mRNA downstream 9076 25156382 ~ 25161150 (+) False LOC110515374
XM_036973108.1 mRNA downstream 10967 25158273 ~ 25159773 (+) False LOC110515374
XM_021594294.2 mRNA downstream 11315 25158621 ~ 25159773 (+) True LOC110515374
XM_021594286.2 mRNA downstream 14934 25162240 ~ 25165365 (+) True vmo1b
TU272008 other upstream 362239 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 371821 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 387801 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1082517 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 1209097 23908750 ~ 23929087 (+) True LOC110514733
TU272577 other downstream 47981 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 393463 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 1066336 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1180102 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1180102 26327408 ~ 26328025 (+) True G239752

Expression Profile